Sequence
atgc intronic sequence ATGC exonic sequenceCGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtattatatgactgtgcacttagaaatctcagcatctattgtgttctatatcatttttatgcattgctaattgtttaaaaaaatataccttttcta...
Basic information
species | Glycine max |
transcript | GLYMA20G33140.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 7
CGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtattatatgactgtgcacttagaaatctcagcatctattgtgttctatatcatttttatgcattgctaattgtttaaaaaaatataccttttcta
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TGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCTAGAGATATAAAGTTTCCAAATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAgtaagataggcttcact-tttagccagtcttttctagatcaaaagtcatcgttataattgttttgttgtggttatggttcatttcag-------------
upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 7
CGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtattatatgactgtgcacttagaaatctcagcatctattgtgttctatatcatt---tttatgcattgctaattgtttaaaaaaatataccttttcta
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TGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGgtaag------------atgcatcaaaagccgttgtcaccaatcaaatgatatggcagtaactctttaaatgtgcgattctctcag-----------------
upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 8
CGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtattatatgactgtgcacttagaaatctcagcatctattgtg-ttctatatcatttttatgcattgctaattgtttaaaaaaatataccttttcta
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TGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCGAGAGATATCCGATTTCCAAATTACTTTTCCGATGAAGCTCGAGATCTCATTGACCGGCTATTGgtaagcacaacttaactgctggttagcttcagttaagaagtggtataacttcagctgatttttttttttccatatttcttttttcttacttattttgaaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208074095|gb|GD872030.1|GD872030EST: TTCCAGATTACTTTTCTGACGAAGCAAGAGACCTTATTGACCGCCTGTTG GATTTGGACCCCAGCA
genomic: TTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtatta ... tatgatgcagGATTTGGACCCCAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCGAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGATCTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGCCTGTTGgttagtattatatgactgtgcacttagaaatctcagcatctattgtgttctatatcatttttatgcattgctaattgtttaaaaaaatataccttttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa