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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAGgtaaataggagcaatgtggaagctgctttttttaagttttcttttatatagtatttatatatatattttattttttctag

Basic information

species Glycine max
transcript GLYMA20G33140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 5
TTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAGgtaa-ataggag--caatgtggaagctgctttttttaagttttc---ttttatatagtatttatatatatattttattttt--tctag--------------------------
 | || || ||  | || ||||| ||||| || || |||||||| ||||| ||||| |||||||||||||| || || || || || |||||||| || ||||| ||    |  ||   |     ||| | | | | || |||    | ||||  | || ||||    | ||| |  |||    ||                            
CTGTTGCTGACTTCAGATGGACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATGCAGGATAGCCAGATCACAGTTCTACCTAATGCAGCTTCTGgtaacatgaccgtccataatcctttctggtatctctgagctttaaggtcttat-caataattattgtcagattctgctttaagcctgtctctgtaaaactggtgacgtatacag

upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 6
TTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAGgtaaataggagcaatgtggaagctgcttttt--ttaagttttcttttatatagtatttatatatatattttattttttctag------------------------------------------------------------------------------------------------------------
||  ||||||| || || |||||||| ||||| || |||||||||||||| ||||||||||||||||| | ||| || |||||||| |||||||||||||||||  |  | ||   ||  |  |  |  |   | || ||||||      | | | ||  |  |   |   |      ||                                                                                                              
TTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTTGGGAGTGTAAAGCCTATGCAGGATAGTCTAATTACCGTCCTTCCCAATGCAGCATCAGgtaag-actatcatcctgtcattttttgataggtaaatttttctccccattgggacttgaacttccctcccacaaaccctccccatccctttaccacttgaggcaggcctcaagaacggctatcatcctgtcatgatgatgctattttatcaatgactaattaaccaaaaaccatatatttcctgtccag