1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gccccgagaacccccttatatgaattctacttcttaatcctatcatattttgagttgttttaaacttctatttttcttattaaataatgtaatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGAAAAAGGCAATTGAAGGACTCCAAAACCGGTGAATTTATTCTGGTTTTG
species | Glycine max |
transcript | GLYMA20G33140.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGEST: gi|208317425|gb|GE112300.1|GE112300
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGEST: gi|193695724|gb|FK636030.1|FK636030
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGEST: gi|151407234|gb|EV277049.1|EV277049
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: CATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGEST: gi|207846906|gb|GD819125.1|GD819125
genomic: CATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTA-TGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGEST: gi|193567168|gb|FK526921.1|FK526921
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: TTTAAGTCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTG
genomic: TTTAAG-CATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCT-AAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTG
tattttgagttgttttaaacttctatttttcttattaaataatgtaatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGAAAAAGGCAATTGAAGGACTCCAAAACCGGTGAATTTATTCTGGTTTTG
ttgttttaaacttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccccgagaacccccttatatgaattctacttcttaatcctatcatattttgagttgttttaaacttctatttttcttattaaataatgtaatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGGAAAAAGGCAATTGAAGGACTCCAAAACCGGTGAATTTATTCTGGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
gccccga
- - - - - ccccctt
- - - - - - - - - - tgaattc