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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttcttttcttcactggttcttgttatacaatttgcactattttataattatagaaaacagtacgtgagagatcaaagtcagattccaaggtgg...

Basic information

species Glycine max
transcript GLYMA20G33140.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 11
CCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttcttttcttcactggt---tcttgttatacaatt---tgcactattttataattatagaaaacagtacgtgagagatcaaagtcagattccaaggtgg
|||  | ||||| || || |||||||||||||| |||||||| || || |||||  | |||||||||||  | ||||| ||| |||||||||||||||| ||| |     | ||   || |  |   | |||    ||| ||   ||  |  |||| ||  | |   ||| |    |  |  | | |      |   | |      
CCCTGCGAAGCTGATGGTAAAGGGAAATATAATCTGGTCTGACAACCCTAATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGgtatgtcccttctttcccaatcttctgttttggggcacatttccttggtcatttttttacctcttctaaagacattgcaattgctgaccacatggaccta------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286392|gb|BI470283.1|BI470283
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: gi|208317425|gb|GE112300.1|GE112300
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: gi|193695724|gb|FK636030.1|FK636030
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: gi|151407234|gb|EV277049.1|EV277049
EST:     CATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
genomic: CATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: gi|207846906|gb|GD819125.1|GD819125
EST:     ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAGGTA-TGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTGG
EST: gi|193567168|gb|FK526921.1|FK526921
EST:     TTTAAGTCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA                         CCTAAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTG
genomic: TTTAAG-CATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagctttc ... aatggtgcagCCT-AAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGCCAGTG