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...agcctatcaatcttaatgcttcatgtatgtgttcagactaatctttttaagggtttatatgatttttgcaattaatgtccgagatatatgtgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGGGCCCACTTTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTAT
species | Glycine max |
transcript | GLYMA20G03330.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGEST: gi|298172645|gb|HO019685.1|HO019685
genomic: GAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
EST: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGEST: gi|6482215|gb|AW201486.1|AW201486
genomic: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
EST: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGEST: gi|21887828|gb|BQ741041.1|BQ741041
genomic: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
EST: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGEST: gi|22524022|gb|BU082833.1|BU082833
genomic: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
EST: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGEST: gi|193583007|gb|FK543219.1|FK543219
genomic: TCTAAAGCAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
EST: CAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
genomic: CAAATTCCTTGAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGG
tttaagggtttatatgatttttgcaattaatgtccgagatatatgtgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGGGCCCACTTTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTAT
aattaat putative branch site (score: 3)
tgtttttc putative PPT
tttatatgatttttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcctatcaatcttaatgcttcatgtatgtgttcagactaatctttttaagggtttatatgatttttgcaattaatgtccgagatatatgtgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGGGCCCACTTTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTAT
- - - - - - - - tgcttca
- - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca