Sequence
atgc intronic sequence ATGC exonic sequenceGCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccctgccccctcccaaatgttttattgtttttttccttacattttattgttttcatgaatgccatgcttaaaattctgacttactttttttggcatgtatttatgtag
Basic information
species | Glycine max |
transcript | GLYMA20G03330.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g30750.1 (Oryza sativa), 5'ss of exon 4
GCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccc---tgccccctc---ccaaatgttttattgtttttttccttacattttattgttttcatgaatgccatgct----taaaattctgacttactttttttggcatgtatttatgtag----------------
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GCCCCAAATATGCTGTCAAGTATCACACAGCTGCAGAGAATGCACTTAGTCACTGCTACCGTTCTTGTTTGGAACTCCTCATTGAAAATGGCCTTGAAAGgtacttgtataatcgtgtggatcaaattctttaatccgtagttaacatcattcctagtttaacatgtatgcactgctggttttgaatcaacgcatgctgttagtaatttcttttaat-tggtcttttatttcattag
upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G836588_T01 (Zea mays), 5'ss of exon 4
GCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccct----gccccctcccaaatgttttattgtttttttccttacattttattgttttcatgaatgccatgcttaaaattctga-cttactttttttggcatgtatttatgtag-------------
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GCCCCAAATATGCTGTCAAGTATCACACAGCTGCAGAGAATGCACTTAGTCACTGCTATCGGTCCTGCTTGGAACTGCTCATTGAGAATGGTCTTGAAAGgtacacgtaggatcatattgcttaaatctagttgctaattttagtttgacaaatgatgtttg-ggtcatcctgtttcacatattgaactttatattattagta-atatttctgttgcttatttcattag
upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
GCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccctgccccctcccaaatgttttattgtttttttccttacat------tttattgtttt---catgaatgccatgcttaa--aattctgacttactttttttggcatgtatttatgtag
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GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgc----tatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208089709|gb|GD889126.1|GD889126EST: CATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAG CATTGCTATGGGCTGTATTTATACGGAGGCAAAGAACTATCCCCGAGAACC
genomic: CATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccctgcc ... atttatgtagCATTGCTATGGGCTGTATTTATACGGAGGCAAAGAACTATCCCCGAGAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccctgccccctcccaaatgttttattgtttttttccttacattttattgttttcatgaatgccatgcttaaaattctgacttactttttttggcatgtatttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT