1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCTTGTTTTTCTCATTTGTCCCAAACAAAATTAATTTTTGTGGAACACTTTTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAGgtttcactttcttctctctcctgaaaatctcgaattagggttctgattttaactaattttccgttttgatggtacttttcaatttgggtaatccgatgaa...
species | Glycine max |
transcript | GLYMA20G03330.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAG CATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTAEST: gi|213619770|gb|DB967392.1|DB967392
genomic: TTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAGgtttcacttt ... attgttgtagCATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTA
EST: TTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAG CATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTAEST: gi|15200343|gb|BI424299.1|BI424299
genomic: TTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAGgtttcacttt ... attgttgtagCATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTA
EST: CATCAATTTTCAG CATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTAEST: gi|5753619|gb|AI960906.1|AI960906
genomic: CATCAATTTTCAGgtttcacttt ... attgttgtagCATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTA
EST: TTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAG CATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTA
genomic: TTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAGgtttcacttt ... attgttgtagCATAGTGATTGTGGAAGCTCAACAGAGGGATTGGTACTGTAGATAGGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTGTTTTTCTCATTTGTCCCAAACAAAATTAATTTTTGTGGAACACTTTTTCGACACCCCCGAATTCCCACCTGCAGATTCTCCCCATCAATTTTCAGgtttcactttcttctctctcctgaaaatctcgaattagggttctgattttaactaattttccgttttgatggtacttttcaatttgggtaatccgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc