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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactgcttattttcttctctgtttggtttggtactcttacaaacgatttctgttgtcctaatgcattacactttgaaggttttctgatttctcaatctgacgtgtgtag

Basic information

species Glycine max
transcript GLYMA20G03330.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 11
GCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactgcttattt--tcttctctgtttggtttggtactcttacaaacgatttctgttgtcctaatgcattacactttgaaggttttctgatttctcaatctgacgtgtgtag
 || || ||  |||| |||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||  || || |  ||||  ||  | |||||| |  |   || |  |||  | || |  | | |  |    |  |  ||| |  ||                               
CCAACCGGATTTGGGATGGATGAGGAGATTACAGCAAATACTTGGTCGGAAACACCAGCGTAACCTTCATgtatgctctaccaatttattccaccctgtttagaatcacacacacacatgcaatcttagatctgatttcac-ctctactgtatag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714625|gb|BW654138.1|BW654138
EST:     TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT                         GCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
genomic: TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactg ... acgtgtgtagGCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
EST: gi|298172645|gb|HO019685.1|HO019685
EST:     TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT                         GCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
genomic: TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactg ... acgtgtgtagGCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
EST: gi|6482215|gb|AW201486.1|AW201486
EST:     TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT                         GCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
genomic: TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactg ... acgtgtgtagGCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
EST: gi|21887828|gb|BQ741041.1|BQ741041
EST:     TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT                         GCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
genomic: TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactg ... acgtgtgtagGCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
EST: gi|22524022|gb|BU082833.1|BU082833
EST:     TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCAT                         GCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA
genomic: TGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtgagcactg ... acgtgtgtagGCAATATATGTCCTTCACCCAACTTTCGGACTAAAAGCGGCAGTATTTGGA