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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGGGCCCACTTTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggttataccctgctgctggatatctttttctgttggcaagcattagttggccattataatttttttagcaatgcatacttctatttgaaagtaaaaactgatttgtgttcataagttctaatctttcttttttcccccgttgttttccttggtgttaaatttcag

Basic information

species Glycine max
transcript GLYMA20G03330.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 10
TGGGGTAGACAGTGAGGGTCATCCTGTCATGGTTGTTGTGGGGGCCCACTTTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggttataccctgctgctggatatctttttctgttggcaagcattagttggccattataatttttttagcaatgcatacttctatttgaaagtaaaaactgatttgtgttcataagttctaatctttcttttttcccccgttgttttccttggtgttaaatttcag
||| || ||||  |||||||||||||| ||||||||||| || || |||||||| ||  | || |||||||||||||| ||||| || |||||  | |||||||       ||  | | |  || |||   | | |       |   |   ||||     | | || |    || |  |||| |  |  |                                                                                  
TGGTGTTGACACCGAGGGTCATCCTGTAATGGTTGTTGTAGGAGCTCACTTTTTGCTGCGATGTCTTGATCTGGAGCGTTTTGTACTTTATGTTATTAAGgtaagcacacaatcacatac--ctcgatggttctct-----aactcactgcagttctgtctcaaaactaacata-cggtgcaaatgtacag---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714625|gb|BW654138.1|BW654138
EST:     TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAG                         GAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
genomic: TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggt ... taaatttcagGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
EST: gi|298172645|gb|HO019685.1|HO019685
EST:     TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAG                         GAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCC
genomic: TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggt ... taaatttcagGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
EST: gi|6482215|gb|AW201486.1|AW201486
EST:     TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAG                         GAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
genomic: TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggt ... taaatttcagGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
EST: gi|21887828|gb|BQ741041.1|BQ741041
EST:     TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAG                         GAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
genomic: TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggt ... taaatttcagGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
EST: gi|22524022|gb|BU082833.1|BU082833
EST:     TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAG                         GAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
genomic: TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggt ... taaatttcagGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
EST: gi|193583007|gb|FK543219.1|FK543219
EST:     TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAG                         GAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT
genomic: TTTTACTTAGGTGCCTTGATCTGGAGCGATTTGTGCTCTATGTGGTGAAGgtaatttggt ... taaatttcagGAGTTTGAGCCGTTAATACAGAAGCCTTTTTCTATTGTCTACTTCCACTCT