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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAAGAAAGTGGTATATGTTGATCGCCTTCTGCAGCTCTTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtttatgttttcacacaatgccatcaatacgttttctttttcataatattattctgtgcaatgtgccattttcaatatacggcttctgaaaag...

Basic information

species Glycine max
transcript GLYMA20G03330.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G100707_T01 (Zea mays), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATCGCCTTCTGCAGCTCTTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtttatgttttcacacaatgccatcaatacgttttctttttcataatattattctgtgcaatgtgccattttcaatatacggcttctgaaaag
|| ||||||||||| |||||||| ||  | ||| ||||||| |||||||| ||||| ||||||||| | ||||| || ||||||||||| ||||      | ||              |   |   ||  |||||||    | |       |   | | |    |||| || ||||  |   | ||| |   
GTCTGGAAGAAAGTTGTATATGTCGACAGACTTGTGCAGCTATTCAGATATGTACCACGTGAACAGCTCACCATTCCTGATTTTGTGTTCCAgtaagcaatcta--------------gtacttgttagcttttctt----agaggtccgctagttactagactccatcttaaataatcaa-tcctgcag--

upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM5G836588_T01 (Zea mays), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATCGCCTTCTGCAGCTCTTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtttatgttttcacacaatgccatcaatacgttttctttttcataatattattctgtgcaatgtgccattttcaatatacggcttctgaaaag
|| ||||||||||| |||||||| ||| | ||| ||||||| |||||||| ||||| || || ||  | || || || || ||||| |||||||  |||     ||      ||| || |   ||   | ||  |   ||  |  |    | ||||  ||    |  |  |   ||    | |  || |   
GTCTGGAAGAAAGTTGTATATGTGGATAGGCTTGTGCAGCTGTTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgt-aagtagccctg------cacgatacttccagctc-ttggcacatttgt--ttgcgtactgtaaaactgactgtacttggtaacatgttcttgcag--

upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTTGGAAGAAAGTGGTATATGTTGATCGCCTTCTGCAGCTCTTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtttatgttttcacacaatgccatcaatacgttttctttttcataatattattctgtgcaatgtgccattttcaatatacggcttctgaaaag
|| ||||||||||| |||||||  || || ||||||||||| |||| |||||| |||||||| ||| |||| |||||||| ||||| || ||||     ||| |  | | | |   |  |  |    ||||| |    |||   || || || |    | |   || | |   | | |  ||          
GTATGGAAGAAAGTTGTATATGCAGACCGACTTCTGCAGCTGTTCAAATACGTTCCTCGTGAGCAGCTGACAATCCCAGACTTTGTTTTCCAgtaa---gttcac-tctactcctcacactctagtaacgttattcagttctcgat-ttgttttacttactagaccttgtgtgaaaaattgcag--------

upper sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATCGCCTTCTGCAGCTCTTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtttatgttttcacacaatgccatcaatacgttttctttttcataatattattctgtgcaatgtgccattttcaat-atacggc-ttctgaaaag
|| ||||||||||||||||||||||| || ||  ||||||| ||||||||||| || ||||| |||||||| ||||| || |||||||||||||||||| ||| |||| |    |||   | |  |   ||| ||  ||    |  |  |   |    |  || |||  |  ||| | | ||| |||   | ||
GTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCAgttgagt-tttctgttctttttcaaaatc-tggacttgttctcaattatcaataaccaagttagtaaccgtcccacatctaattaaaaggcattcctgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714625|gb|BW654138.1|BW654138
EST:     TTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA                         GCATGACTTGGAAGTGAATGGAGGGACGGGTCTCATTGTGGATCCAAGAAC
genomic: TTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtt ... attcacacagGCATGACTTGGAAGTGAATGGAGGGACGGGTCTCATTGTGGATCCAAGAAC
EST: gi|22524022|gb|BU082833.1|BU082833
EST:     TTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA                         GCATGACTTGGAAGTGAATGGA
genomic: TTCAGATACGTACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtgtt ... attcacacagGCATGACTTGGAAGTGAATGGA