1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cattattcataatataatgatactgttaagcatgttagacatgaaatggggctaatgttatcttatttcttacctggttttcatttcttgtcatgaacagAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCGACACTG
species | Glycine max |
transcript | GLYMA20G03330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCAACAAATGAG AATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATEST: gi|15200343|gb|BI424299.1|BI424299
genomic: GGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCTACAAATGAGgtgagcacta ... tcatgaacagAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGAT
EST: GGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCTACAAATGAG AATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCTEST: gi|5753619|gb|AI960906.1|AI960906
genomic: GGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCTACAAATGAGgtgagcacta ... tcatgaacagAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCT
EST: GGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCTACAAATGAG AATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCT
genomic: GGAATCCCTGGAATCTTGAGGTGGATGCGGTCGTAAATTCTACAAATGAGgtgagcacta ... tcatgaacagAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCT
atggggctaatgttatcttatttcttacctggttttcatttcttgtcatgaacagAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCGACACTG
ttcttac putative branch site (score: 2)
ttttcatttcttgtc putative PPT
taatgttatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattattcataatataatgatactgttaagcatgttagacatgaaatggggctaatgttatcttatttcttacctggttttcatttcttgtcatgaacagAATATGGATGAAGCACACAGCAGCCCAGGGTTGCATGATGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCGACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - gatactg
- - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - gctaatg