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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttggaccaaacattaccaagctatagcattcatttgtaattttgcttttttgttcggccactaagttattgtttttccttttcttttctttcagCATTCAATGGTACTAAAGCTATTTCGGAAAGG

Basic information

species Glycine max
transcript GLYMA20G03210.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9903221|gb|BE612189.1|BE612189
EST:     TGGAACCCTGCTCCATGATTCCATTGCAGACTCTGGTGCCGTTACCCTTC                         CATTCAATGGTACTAAAGCTATTTCGGAAAGG
genomic: TGGAACCCTGCTCCATGATTCCATTGCAGACTCTGGTGCCGTTACCCTTCgtaagttttg ... tttctttcagCATTCAATGGTACTAAAGCTATTTCGGAAAGG
EST: gi|19453216|gb|BM954626.1|BM954626
EST:     TGGAACCCTGCTCCATGATTCCATTGCAGACTCTGGTGCCGTTACCCTTC                         CATTCAATGGTACTAAAGCTATTTCGGAAAGG
genomic: TGGAACCCTGCTCCATGATTCCATTGCAGACTCTGGTGCCGTTACCCTTCgtaagttttg ... tttctttcagCATTCAATGGTACTAAAGCTATTTCGGAAAGG
EST: gi|254348673|gb|GR852352.1|GR852352
EST:     TGGAACCCTGCTCCATGATTCCATTGCAGACTCTGGTGCCGTTACCCTTC                         CATTCAATGGTACTAAAGCTATTTCGGAAAGG
genomic: TGGAACCCTGCTCCATGATTCCATTGCAGACTCTGGTGCCGTTACCCTTCgtaagttttg ... tttctttcagCATTCAATGGTACTAAAGCTATTTCGGAAAGG
EST: gi|254326999|gb|GR836608.1|GR836608
EST:     GGAA-CCTGCTCCATGATTTCCATTGCAGACTCTGGTGCCGTTACCCTTC                         CATTCAATGGTACTAAAGCTATTTCGGAAAGG
genomic: GGAACCCTGCTCCATGA-TTCCATTGCAGACTCTGGTGCCGTTACCCTTCgtaagttttg ... tttctttcagCATTCAATGGTACTAAAGCTATTTCGGAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcttttttgttcggccactaagttattgtttttccttttcttttctttcagCATTCAATGGTACTAAAGCTATTTCGGAAAGG
                          ttattgtttttccttt  CT-rich tract
                      taagttattgttttt  TA-rich tract