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...gattataacacttgttttttttagcaactttgaaagtttctgtttaagtatgcataacttgaaaataattgatctgaatcactaaaattccacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCATCAACGCGTTACTAGCCAAAG
species | Glycine max |
transcript | GLYMA20G03210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA ATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCAEST: gi|7588722|gb|AW704511.1|AW704511
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
EST: GGGAATGGATGCCTATAGATTTTCCATTTCTTG-TCTCGGATTTTTCCCA ATGGATATGGCCAAATCAATCAGEST: gi|11689544|gb|BF597220.1|BF597220
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAG
EST: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA ATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCAEST: gi|254326998|gb|GR836607.1|GR836607
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
EST: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA ATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
aagtatgcataacttgaaaataattgatctgaatcactaaaattccacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCATCAACGCGTTACTAGCCAAAG
cactaaa putative branch site (score: 2)
ttccactt CT-rich tract
ataacttgaaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattataacacttgttttttttagcaactttgaaagtttctgtttaagtatgcataacttgaaaataattgatctgaatcactaaaattccacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCATCAACGCGTTACTAGCCAAAG
- - - - cacttgt
- - - - - - - - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa