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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattttcatgctgtttatcaaaataggcaattgatttaatgttatttactaccattgtcttataagaattttgtagttaacaaatgttaatagtg...

Basic information

species Glycine max
transcript GLYMA20G03210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03210.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G26560.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagca--ttttcatgctgtttatc---aaaataggcaatt---gatttaatgttatttac--taccattgtcttataagaattttg-tagttaacaaatgttaatagtg---------------
|||||| ||||||| |||||| | ||||||||||| || || |||||||||||||||||| | || || ||||| |||| | |  |||| |   |||||| |   ||  | |   | |   |||| | | ||| |||   ||| | |     | | |  ||||| | | | |   ||| |||||                  
GAAGATGTACAACTTATGAAGAATATGGGAATGGACGCTTACAGATTTTCCATTTCTTGGACCCGCATCTTTCCAAgtatgtaactttttaacatgtttacctttaatcttgtttactttagattaagttttaattatgatactactacaacaaatggcttttgatggattattgatgataatatcatgcatgggtgtacag

upper sequence: GLYMA20G03210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g00760.t01 (Vitis vinifera), 5'ss of exon 4
GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattttca-tgctgtttatcaaaataggcaattgatttaatgttatttactaccattgtcttata-agaattttgtagttaacaaatgttaatagtg
|| ||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| ||  |||||  | ||   ||||| ||     ||     | ||  |  |      ||   ||     |   | || |||| |   ||  ||     |||| |     
GATGATATACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTGgtaagtttctttggtgctgattcatgcaactcatatttcttccagctggtttggttaaggaagaagtctatagaactagatatataggtcctgttgaaca--

upper sequence: GLYMA20G03210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g00750.t01 (Vitis vinifera), 5'ss of exon 4
GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattttca-tgctgtttatcaaaataggcaattgatttaatgttatttactaccattgtct-tataagaattttgtagttaacaaatgttaatagtg
|| ||| ||||||| |||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| ||  |||||  | ||   ||||| ||     ||     | ||  |      ||  |||        |||| || ||  |  | |    |    ||    | ||   
GATGATGTACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTGgtaagtttctttggtgctgattcatgcaactcatatttcttcctggtttggttaaggaagaagtctatagaactagataggtcctgttgaacacaattaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348672|gb|GR852351.1|GR852351
EST:     GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA                         ATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
EST: gi|7588722|gb|AW704511.1|AW704511
EST:     GGGAATGGATGCCTATAGATTTTCCATTTCTTG-TCTCGGATTTTTCCCA                         ATGGATATGGCCAAATCAATCAG
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAG
EST: gi|11689544|gb|BF597220.1|BF597220
EST:     GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA                         ATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
EST: gi|254326998|gb|GR836607.1|GR836607
EST:     GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCA                         ATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA
genomic: GGGAATGGATGCCTATAGATTTTCCATTTCTTGGTCTCGGATTTTTCCCAgtaagcattt ... cacttgttagATGGATATGGCCAAATCAATCAGGCAGGAGTTGATCATTATAATAAACTCA