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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCTATATGGCTGTATATTGTGCCACAAAGCATGAAAAGCTTAATGATCTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttcaaattcttatattctaccaaatctctagagtgaatttaggcattaaaatatttaagtataacataaattacaaatttgattcctttaaagt...

Basic information

species Glycine max
transcript GLYMA20G03210.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03210.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0011g00750.t01 (Vitis vinifera), 5'ss of exon 11
AGTTCTATATGGCTGTATATTGTGCCACAAAGCATGAAAAGCTTAATGATCTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca--aattcttatattctaccaaatctctagagtgaatttaggcattaaaatatttaagtataacataaattacaaatttgattcctttaaagt---
| ||| || ||| ||||||| || || |   | |||| |||||||||||  || ||||| ||||||||||| || |||||||||  ||| || ||||||||| |   |    ||    |       | |  || |||  |||   |||     |||||| |   |||     | ||  ||| |||||  |||  |  |       
AATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAAATGgtgagtgttgggaagaactgggagtcatcccatttctcaagtt--ttttcttcttaaaacac--aagccatgcctat-ttaaaaattctatttttaaacgaaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9903221|gb|BE612189.1|BE612189
EST:     CTATATCANACATAAGTATGGTAACCCTCCTGTCTATATTACAGAAAATG                         GGATGGATGATCCANATAGTATATTTATCTCCATTGAGGATGCTCTAAAGG
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
EST: gi|19453216|gb|BM954626.1|BM954626
EST:     CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATG                         GGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
EST: gi|254348673|gb|GR852352.1|GR852352
EST:     CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATG                         GGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
EST: gi|254326999|gb|GR836608.1|GR836608
EST:     CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATG                         GGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG