1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAAAATAATTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAAgtaagtaacaatgggtacagttaaaatttttggaacctgtttttcatctgcaaaacttatgtttctaaatcagttaaatacttttgcaatctataagagt...
species | Glycine max |
transcript | GLYMA20G03210.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAA GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCEST: gi|7588722|gb|AW704511.1|AW704511
genomic: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAAgtaagtaaca ... ttccatgcagGAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCC
EST: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAT GAAGATATACAACTGATGAATGACATGGGAATGGATGCCTATAGATTTTCCEST: gi|11689544|gb|BF597220.1|BF597220
genomic: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAAgtaagtaaca ... ttccatgcagGAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCC
EST: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAA GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCCEST: gi|254326998|gb|GR836607.1|GR836607
genomic: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAAgtaagtaaca ... ttccatgcagGAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCC
EST: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAA GAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCC
genomic: TTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAAgtaagtaaca ... ttccatgcagGAAGATATACAACTGATGAAGGACATGGGAATGGATGCCTATAGATTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAATAATTGATTTCAGCAATGCTGATGTTGCGGTGGATCAGTACCACCGATACGAAgtaagtaacaatgggtacagttaaaatttttggaacctgtttttcatctgcaaaacttatgtttctaaatcagttaaatacttttgcaatctataagagt
- - - - - - - - - - ATGCTG
- - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - GGTGGA