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...tccatttttttccagcacttttagttggaaaacagtagaataaaatgccaacaaaaagtaaaaattgtaagctaaatcgtctttctcatgtctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGGATGAAAAACGGATCAGATACCACACTGGCTATTTATCTTACTTGTTGGC
species | Glycine max |
transcript | GLYMA20G03210.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTATATCANACATAAGTATGGTAACCCTCCTGTCTATATTACAGAAAATG GGATGGATGATCCANATAGTATATTTATCTCCATTGAGGATGCTCTAAAGGEST: gi|19453216|gb|BM954626.1|BM954626
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
EST: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATG GGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGGEST: gi|254348673|gb|GR852352.1|GR852352
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
EST: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATG GGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGGEST: gi|254326999|gb|GR836608.1|GR836608
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
EST: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATG GGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
genomic: CTATATCAAACAAAAGTATGGAAACCCTCCTGTCTATATTACAGAAAATGgtaatcttca ... tctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGG
tgccaacaaaaagtaaaaattgtaagctaaatcgtctttctcatgtctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGGATGAAAAACGGATCAGATACCACACTGGCTATTTATCTTACTTGTTGGC
agctaaa putative branch site (score: 3)
tctttctcatgtct putative PPT
aaaaagtaaaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatttttttccagcacttttagttggaaaacagtagaataaaatgccaacaaaaagtaaaaattgtaagctaaatcgtctttctcatgtctatcacagGGATGGATGATCCAAATAGTATATTTATCTCCATTAAGGATGCTCTAAAGGATGAAAAACGGATCAGATACCACACTGGCTATTTATCTTACTTGTTGGC
- - - - - -ccagcac
- - - - - - - - - - - - - ggaaaac
- - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - -ccaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaagc