Sequence
atgc intronic sequence ATGC exonic sequence...agtttggtggtgactagtgtattttatctttagacatttcttactacagttctaatatgtagaatttaaaatattatcactgaatttgtcttactttcagTTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCA
Basic information
species | Glycine max |
transcript | GLYMA20G02060.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02060.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G01460.1 (Arabidopsis thaliana), 3'ss of exon 8
agtttggtggtgactagtgtattttatctttagacatttcttactacagttctaatatgtagaattta-aaatattatcactgaatttgtcttactttcagTTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCA
|| | || | || | | | | | | || || | | | || | | ||| | ||| | || | |||||||||||| || |||||||| ||||||||||| || || ||||| ||| |||||||||| ||||| ||||| || || |||| || || || ||| | |||
---------gtaagaaggattcttctattatgtgtgaatagtttaagatttttagt---tggttttcataggtatactgacttggtgagt-tggttttcagTTTTATTGAGATGTACCTCAGACCACCTTCTGCAAGCGAAGAGGCACGGATAAATGACTGGATTAAAGTTCGTCAAGCTGGTATAAGGTACTATCTGTCA
upper sequence: GLYMA20G02060.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0011g04960.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------agtttggtggtgactagtgtattttatctttagacatttcttactacagttctaatatgtagaatttaaaatattatcactgaa--tttgtcttactttcagTTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCA
| || || | || || || |||| | | ||| | | ||||| || | || || || | | ||| || | || ||||||||||||| || ||||||||||| || || ||||| | |||||||||| |||||||||||||||| ||||||||||| ||||| || |||||||||||||||
gtaagtgtgttgataactattcattcctatctctgacagtaa-tattgaataa-atctacattcctttttcttttggtttctattaactttggttgcaactaatgtattagaaccttcattttgctttcagTTTTATAGAGATGTACCTTAGGCCTCCATCAGCAAATGAAGAAGCACGGATAAATGATTGGATTAAAGTGCGGCAATCTGGTATCAGATATTATTTATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acagttctaatatgtagaatttaaaatattatcactgaatttgtcttactttcagTTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCA
tttgtcttactttc CT-rich tract
taatatgtagaattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtttggtggtgactagtgtattttatctttagacatttcttactacagttctaatatgtagaatttaaaatattatcactgaatttgtcttactttcagTTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCA
- - tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa