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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTGTACTGTTATATCAATGGAGAATTATCGTGTTGGAGTAGATGAAGGGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcatttgcttctcttttacattaccattcctaaactgccagtctggccatcctttaaatggtcctgatgtatttgcaaggctgatccttacaaagc...

Basic information

species Glycine max
transcript GLYMA20G02060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g04960.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTGTACTGTTATATCAATGGAGAATTATCGTGTTGGAGTAGATGAAGGGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcatttgcttctctt-ttacattaccattcctaaactgccagtctggccatcctttaaatggtcctgatgtatttgcaaggctgatccttacaaagc----
||| ||||||||| |||| |||||||| ||||||| |||||| ||||| || ||||||||| |||| |||||||||||||| ||| |    ||||||||||||||||||| || ||||| ||  | |  |||  |  |  |   |   | |  |   ||||||    | || |  |       |    | ||||| | |      
TGGCTGTACTGTTGTATCCATGGAGAACTATCGTGATGGAGTGGATGATGGAAATGATTTGAATTCCATAGATTTTGATGCACTGGTTTCAAATCTTGAGgtttgcatttactgctcttcttttaatcacataacatagtttttatcttag--aggatttaaa---acatgttacacgactgggctcaaaccttaaagatattgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208306089|gb|GE105792.1|GE105792
EST:     GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG                         GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
EST: gi|207756690|gb|GD728528.1|GD728528
EST:     GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG                         GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
EST: gi|207749864|gb|GD718174.1|GD718174
EST:     GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG                         GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
EST: gi|208098385|gb|GD896850.1|GD896850
EST:     GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG                         GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA