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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTTGTGAAGTAGTTTCACTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAGgtaagctaattgaatagtttagatgcagttgattgggttactctgcatgataattgattgctgttgcaccttcatatacataacttcttgtgtactgatt...

Basic information

species Glycine max
transcript GLYMA20G02060.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0011g04960.t01 (Vitis vinifera), 5'ss of exon 15
AATTGGTTGTGAAGTAGTTTCACTGGAAAGCTATTATAAA------CAAGTAAAGGATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAGgtaagctaa-ttgaatagtttagatgcagttgattgggt----tactctgcatgataattgattgctgttgcaccttcatatacataacttcttgtgtactgatt
       |||||||||||||| || |||||||||||||||      || |||||||| ||||| |  ||||| || ||  | |||||| | || ||||| ||||||||||   |  ||| |||   | ||     ||| || | |    |  |||  ||  | ||  |||   | |  |   | | ||   |||  ||   |  |   | |
------CTGTGAAGTAGTTTCCCTTGAAAGCTATTATAAATCTGAACATGTAAAGGACTTTAAGTGCGATGATTTTAGTTCTCTTGATCTGTCTTTGCTTTCAAAGgtaacacatcttgtatataattgaccattttgttttgatactattttctttattgtcataaatttgggctaaa---tgagatggctaa--tcagataaatgaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105622|gb|BI893362.1|BI893362
EST:     ATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAG                         AATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGAC
genomic: ATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAGgtaagctaat ... tcccttgcagAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGAC
EST: gi|6482090|gb|AW201361.1|AW201361
EST:     ATTTTAAATATGATGACTTCAGCGCACTTGATTTATTCTTGCTATCAAAG                         AATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGAC
genomic: ATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAGgtaagctaat ... tcccttgcagAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGAC