Sequence
atgc intronic sequence ATGC exonic sequenceCATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtcagttattaaactatttcccccaatgcctgaaatttgtttcctccattataactttgcttgtgagattttacagaatggcctgaagttgaaaatatat...
Basic information
species | Glycine max |
transcript | GLYMA20G02060.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 16
lower sequence: AT2G01460.1 (Arabidopsis thaliana), 5'ss of exon 16
CATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtcagttattaaactatttcccccaatgcctgaaatttgtttcctccattataactttgcttgtgagattttacagaatggcctgaagttgaaaatatat
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CATTACAAACAGTCGAAGAACCAAACTACCTATATTTGATTTGGAGACTGGCACCAGATGTGGCTTCAAGGAACTAGAAGTTCCTGAAGAGTGTGGTGTGgttagtgatcatagt-cttcacatatcatatggtgattgtctttgttgtttt--ctcagcgtggatgatttt-tataccacatcgttttttag-------
upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 16
lower sequence: AT2G01460.2 (Arabidopsis thaliana), 5'ss of exon 16
CATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtcagttattaaactatttcccccaatgcctgaaatttgtttcctccattataactttgcttgtgagattttacagaatggcctgaagttgaaaatatat---------------------------
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-------------------------------ATATTTGATTTGGAGACTGGCACCAGATGTGGCTTCAAGGAACTAGAAGTTCCTGAAGAGTGTGGTGTGGTTAGTGATCATAGT-CTTCACATATCATATGgtgattgtctttgttgtttt--ctcagcgtggatgatttt-tataccacatcgttttttagatcatcttcgagggggtttatgcattgcatccag
upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0011g04960.t01 (Vitis vinifera), 5'ss of exon 16
CATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtcagttattaaact-atttcccccaatgcctgaaatttgtttcctccattataactttgcttgtgagattttacagaatggcctgaagttgaaaatatat-----
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TGTAAAAAACTGCCGAAGAACAAAAGTTCCTATATTTGACTTGGAGACTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtatgctattacatttattaaaatcactctcagggcctccttctcttggatttagtttaccttgaa-----tcactgattcactgcaaatt-aacatgtgttataaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16105622|gb|BI893362.1|BI893362EST: GTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTG ATTATATTTGAAGGCGTCTATGCCCTGCATCCTGATATTCGAATATCACTT
genomic: GTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtcagttatt ... ttttgaccagATTATATTTGAAGGCGTCTATGCCCTGCATCCTGATATTCGAATATCACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGgtcagttattaaactatttcccccaatgcctgaaatttgtttcctccattataactttgcttgtgagattttacagaatggcctgaagttgaaaatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc