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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCGACTTCTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGgtatatttagcatgcagcaatttcataatcgctttttcttattctcgctttctcatttctagatgatattataggctttgcttgcaatttggatgaactg...

Basic information

species Glycine max
transcript GLYMA20G02060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G003648_T01 (Zea mays), 5'ss of exon 1
--GCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCGACTTCTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGgtatatttagcatgcagcaatttcataatcgctttttcttattctcgctttctcatttctagatgatattataggctttgcttgcaatttggatgaactg
  |||| |    | |  |  |   | |  |  | |||  |  |  ||| || | ||| |  |  | ||||| |||||||||||||||||||| ||||| |||||| |            |  | || |   | |||  ||  ||  ||  ||||||  |   |  |  || |     |||    | |   ||     |    
CCGCGACTTCCTCTTCCACCATACCTCT-TCCCCTCCCTCTCCGACCTCCG-CCTCTGCCGCTGCATCCTCCTCCATCCTCCAATCTCTCCCCCTCCACGTGgtaaaccctct------ccctctcgtctcctcttcctcgcatcatccatttctcgatctaatgtcctaatcc---cttcctctaccccttcccccag---

upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g04960.t01 (Vitis vinifera), 5'ss of exon 1
---GCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCGACTTCTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGgtatatttagcatgcagcaatttcataatcgctttttcttattctcgcttt-ctcatttctagatgatattataggctttgcttgcaatttggatgaactg
   | |||  ||||| |||||||| || || |||| ||| || ||||| || |||||||   |||| ||||||||||| |||||||| ||||||||||||||||||   | | |    | | |  |  |  |    || ||  |||| || |   ||   ||    | || |  | |     |  ||        |   | | |
GCAGAGAGCCTTCCAAGAAGGAGGTCGAGACTACTACCAACAGCAGCCATCCACTTCTT---CGTCATCCTCTTCCATTCTCCAATCCCTCCCTCTCCATGTGgtacgatcacccattacctaggttttttttttcttctccaattcacgttccacttggttgccca-gaaagcaaaaataataattttgtaacagccaaccag