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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCTATGACATTGGGGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGgttggttctgttcttattctcacctctaaatttcacaactaatacttttcatttcccttgcccttttttggcagatcagaattaataacagctttgtctc...

Basic information

species Glycine max
transcript GLYMA20G02060.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G01460.1 (Arabidopsis thaliana), 5'ss of exon 6
TCGCTATGACATTGGGGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGgttgg-ttctgttcttattctcacctctaaat-ttcacaactaatacttttcatttcccttgcccttttttggcagatcagaattaataacagctttgtctc
 || ||||| ||||| ||||| ||||| || ||||||||||| || |||||||| || || ||||| || || |||||||||||||||||||||||||||||||  || | ||||| |||   | | ||| | |||| || |   |||| ||  ||   | | | | |   |                              
CCGTTATGATATTGGAGATTCGTGTTCGCTTGATTACCTTATCGACAGCATTTTCCCTTTGTTTAGAAAGCATATTGAGCCAGATCTTCATCATGCACAGgttgaattgtcttctttttcctccatttaagtgttcagaagtttgacttctccgtttgttgggcgtgtgcag------------------------------

upper sequence: GLYMA20G02060.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g04960.t01 (Vitis vinifera), 5'ss of exon 6
TCGCTATGACATTGGGGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGgttggttctgttcttattctcacctc-taaatttcacaactaatacttttcatttcccttgcccttttttggcagatcagaattaataacagctttgtctc
||| ||||| ||||| |||||||||||  |||| |||||||| || |||||||| |||||||| || || || ||||||||||| ||||||||||| |||||| ||  | |   |   |||||||  ||||  |     || ||  | || || |  ||     ||| |  ||||                          
TCGATATGATATTGGAGATTCTTGTTCTTTGGACTACCTTATTGACAGCATTTTCCCATTATTCAGAAAGCATATTGAGCCAGACCTTCATCATGCTCAGgttagtgtt-taaatgccctcaccttgtaaaccttgttgctgat--tcttaatctttctaaaattttct--gcag--------------------------