1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttttagtaacaaatgcaaatgagtcttatgtgttgctctgggaaattttttttcctttttattttatactttgttaatgagcttcctctgttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGCGGTG
species | Glycine max |
transcript | GLYMA20G02060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAEST: gi|207756690|gb|GD728528.1|GD728528
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
EST: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAEST: gi|207749864|gb|GD718174.1|GD718174
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
EST: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAEST: gi|208098385|gb|GD896850.1|GD896850
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
EST: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAG GATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
genomic: GGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGgtttgcattt ... ttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAA
ttttttttcctttttattttatactttgttaatgagcttcctctgttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGCGGTG
tgttaat putative branch site (score: 3)
cttcctctgtttt putative PPT
tttcctttttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagtaacaaatgcaaatgagtcttatgtgttgctctgggaaattttttttcctttttattttatactttgttaatgagcttcctctgttttaattagGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - -aatgcaa
- - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc