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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatggtttcttcaaaatttgtttgaccaaagtgagcaaagcatgagttaaggaactcaggttattagttacatatacttgacaagttgatcttgttgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGAACTTGATTACATATTGTGATTTTGGCAATAAGAGAGCATTAAG

Basic information

species Glycine max
transcript GLYMA19G36990.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36990.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 3'ss of exon 7
gtacatggtttcttcaaaatttgtttgaccaaagtgagcaaagcatgagttaaggaactcaggttattagttacatatacttgacaagttgatcttgttgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGAACTTGATTACATATTGTGATTTTGGCAATAAGAGAGCATTAAG--
       ||      ||| |||    ||||    ||   |        ||| | |||   | || |  ||   |  | |||   ||  || ||  ||      |  |||||||||||||||| |||||||| || |||||||| || ||||||||||| ||||||  ||||  ||     || |           ||    |||  |   
-------gtaaaagtaaagttta---gacctttatggatatgtt----gttgatgaatagaagtaa--agcagctcacact---cacctttattgtgac----tctagGGTCCTGAGTTTGCAACCATTGTGAACTCAGTCACGTCGAAGAAAGTTGCTGCTTGA--TTGAGAACTATCAGTAACGGAAATCGCTAGTCTCCATGGAACA

upper sequence: GLYMA19G36990.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 8
----gtacatggtttcttcaaaatttgtttgaccaaagtgagcaaagcatgagttaaggaactcaggttattagttacatatacttgacaagttgatcttgttgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGAACTTGATTACATATTGTGATTTTGGCAATAAGAGAGCATTAAG------
     || ||||      || |||||| ||  ||||   |     |  | ||  | |     ||    | || | |    ||  || |||| ||  | ||   | ||||||||||||||| ||||||   ||||||||||| || ||||||||||||||||| ||||      ||| ||  |   || |||| ||| |   |||  || ||       
gctattaaatgg------cacaatttggtttcccaagcagtttcgataaagatattaatgtttc----tttttggtgttgatgatt-acaacttagtatt-cggtggtgcagGGTCCTGAATTTGCTGTGATTGTCAATTCTGTAACATCCAAGAAAGTTGCTGCTT------GATCACTCACACTGGTTTTTGCACTGGAAGAAAATAAAAGGCCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193466603|gb|FK433060.1|FK433060
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193324620|gb|FK290912.1|FK290912
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTG
EST: gi|193608961|gb|FK561545.1|FK561545
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208216659|gb|GE012563.1|GE012563
EST:     AAGCAAGAAGATATTGATGGATTTCNCGTTGGAGGTGCTTCAATTAAAAG                         GGTCCTGAGTTTGCTACCATTG
genomic: AAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCA-TTAAA-Ggtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTG
EST: gi|58019066|gb|CX705808.1|CX705808
EST:     AAAGCAAGAAGATATTGATGGATTTCTCGT-GGAGGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: AAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGG-TGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193611607|gb|FK560406.1|FK560406
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCA
EST: gi|207810751|gb|GD782084.1|GD782084
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|22928726|gb|BU545865.1|BU545865
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGNNNGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|51343283|gb|CO984016.1|CO984016
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|192303892|gb|FG998244.1|FG998244
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208297931|gb|GE095778.1|GE095778
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
EST: gi|193377009|gb|FK342646.1|FK342646
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGC
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGC
EST: gi|208159788|gb|GD956600.1|GD956600
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193543067|gb|FK504220.1|FK504220
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208145995|gb|GD943634.1|GD943634
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGT
EST: gi|193720483|gb|FK657391.1|FK657391
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCGTTGTCAATTCAGTCACAT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
EST: gi|208125255|gb|GD921027.1|GD921027
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207703691|gb|GD686577.1|GD686577
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
EST: gi|208124914|gb|GD922568.1|GD922568
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTACACATCCAAGAA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGT-CACATCCAAGAA
EST: gi|58018739|gb|CX705481.1|CX705481
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193365247|gb|FK331810.1|FK331810
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAG
EST: gi|207752430|gb|GD725837.1|GD725837
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACA
EST: gi|193553237|gb|FK509944.1|FK509944
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACAT
EST: gi|208232828|gb|GE030369.1|GE030369
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|31306345|gb|CD391548.1|CD391548
EST:     AAAGCAAGAAGATATTGACTGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTCCG
genomic: AAAGCAAGAAGATATTGA-TGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208158045|gb|GD952520.1|GD952520
EST:     TCGTTGGAGGTGCTTCAATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGC
genomic: TCGTTGGAGGTGCTTC-ATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGC
EST: gi|31472227|gb|CD414255.1|CD414255
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|31468010|gb|CD410038.1|CD410038
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|31312048|gb|CD397251.1|CD397251
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193375901|gb|FK342112.1|FK342112
EST:     ATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: ATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|151403402|gb|EV273212.1|EV273212
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|31462854|gb|CD404882.1|CD404882
EST:     CNAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193401803|gb|FK365916.1|FK365916
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|31467265|gb|CD409293.1|CD409293
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193519001|gb|FK474570.1|FK474570
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193327767|gb|FK296826.1|FK296826
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACA
EST: gi|193600511|gb|FK554710.1|FK554710
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTNTCAATTCAGTCA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCA
EST: gi|192331704|gb|FK022806.1|FK022806
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|209724433|gb|BW666668.1|BW666668
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|31311909|gb|CD397112.1|CD397112
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193603110|gb|FK559415.1|FK559415
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGT
EST: gi|22541726|gb|BU091569.1|BU091569
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207692256|gb|GD674397.1|GD674397
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193410152|gb|FK370847.1|FK370847
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTG
EST: gi|208182236|gb|GD980249.1|GD980249
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208326736|gb|GE124954.1|GE124954
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAA
EST: gi|193696711|gb|FK637937.1|FK637937
EST:     GTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: GTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193705817|gb|FK648037.1|FK648037
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207809969|gb|GD782827.1|GD782827
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCA
EST: gi|208176680|gb|GD979111.1|GD979111
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAG
EST: gi|214007266|gb|DB990537.1|DB990537
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208180660|gb|GD975891.1|GD975891
EST:     CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtt ... tgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaactcaggttattagttacatatacttgacaagttgatcttgttgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGAACTTGATTACATATTGTGATTTTGGCAATAAGAGAGCATTAAG
                                       tcttgtt  CT-rich tract
          ttattagttacatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatggtttcttcaaaatttgtttgaccaaagtgagcaaagcatgagttaaggaactcaggttattagttacatatacttgacaagttgatcttgttgaggtgcagGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGAACTTGATTACATATTGTGATTTTGGCAATAAGAGAGCATTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA