1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcgtgttgttcttgatgtgattctgatgtttgaaccaaatgttatactacaatttaatgagttaattcagtcacttagttattaaaacctgactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG
species | Glycine max |
transcript | GLYMA19G36990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|51343283|gb|CO984016.1|CO984016
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|192294177|gb|FG986266.1|FG986266
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|19054173|gb|BM732840.1|BM732840
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|192303891|gb|FG998243.1|FG998243
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG TGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|20814775|gb|BQ299253.1|BQ299253
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|58018739|gb|CX705481.1|CX705481
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|7691290|gb|AW759483.1|AW759483
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|10843866|gb|BF067227.1|BF067227
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|8283483|gb|BE021042.1|BE021042
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|15204307|gb|BI427075.1|BI427075
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|298173868|gb|HO017204.1|HO017204
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|17519271|gb|BM188313.1|BM188313
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|213590993|gb|DB973762.1|DB973762
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAANAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|8284792|gb|BE022351.1|BE022351
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|120533074|gb|EH261207.1|EH261207
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|209724432|gb|BW666667.1|BW666667
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|192326679|gb|FK018521.1|FK018521
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|192331703|gb|FK022805.1|FK022805
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|21993826|gb|BQ785354.1|BQ785354
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
genomic: GCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACGGGAGAAATCAGgttagctcac ... gactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
actacaatttaatgagttaattcagtcacttagttattaaaacctgactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG
acctgac putative branch site (score: 3)
ctcttt CT-rich tract
aatttaatgagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtgttgttcttgatgtgattctgatgtttgaaccaaatgttatactacaatttaatgagttaattcagtcacttagttattaaaacctgactctttagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -tgttgtt
- - - - - cttgatg
- - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtcac