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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatctttccctctaagtgttttttttattattattattgttgttgaaaatcaaaatgctatgtttatttctggtgattgagtagttgagttgttt...

Basic information

species Glycine max
transcript GLYMA19G36990.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23725706|gb|BU760816.1|BU760816
EST:     TTCTTTGTTGGGGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|192294177|gb|FG986266.1|FG986266
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|19054173|gb|BM732840.1|BM732840
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|192303891|gb|FG998243.1|FG998243
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|20814775|gb|BQ299253.1|BQ299253
EST:     CTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|7691290|gb|AW759483.1|AW759483
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|15204307|gb|BI427075.1|BI427075
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|298173868|gb|HO017204.1|HO017204
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|17519271|gb|BM188313.1|BM188313
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|213590993|gb|DB973762.1|DB973762
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|8284792|gb|BE022351.1|BE022351
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|27425736|gb|CA937256.1|CA937256
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|120533074|gb|EH261207.1|EH261207
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|209724432|gb|BW666667.1|BW666667
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|192326679|gb|FK018521.1|FK018521
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTATTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|192331703|gb|FK022805.1|FK022805
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
EST: gi|21993826|gb|BQ785354.1|BQ785354
EST:     TTCTTTGTTGGCGGCAACTGGAAGTGT                         AACGGAACAAAAGACT-CATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA
genomic: TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatct ... ttatctctagAACGGAACAAAAGACTCCATCAGTAAGCTTGTTGCTGACTTGAACAGTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTTTGTTGGCGGCAACTGGAAGTGTgtaagtatctttccctctaagtgttttttttattattattattgttgttgaaaatcaaaatgctatgtttatttctggtgattgagtagttgagttgttt

- - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc