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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTCTCAATCTTTCTCTGTCTTCGACCCCAATCTTCGCCTATCCCTCTCTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttcttcttcttttatacttttaaaaaaacaaagtttattattttcattacccttgatcgttaaataaaacgtgtcactgtgatttctgtgggg...

Basic information

species Glycine max
transcript GLYMA19G36990.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23725706|gb|BU760816.1|BU760816
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGGGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|192294177|gb|FG986266.1|FG986266
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|19054173|gb|BM732840.1|BM732840
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|192303891|gb|FG998243.1|FG998243
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|20814775|gb|BQ299253.1|BQ299253
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         CTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|7691290|gb|AW759483.1|AW759483
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|15204307|gb|BI427075.1|BI427075
EST:     CCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|298173868|gb|HO017204.1|HO017204
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|17519271|gb|BM188313.1|BM188313
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|213590993|gb|DB973762.1|DB973762
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|8284792|gb|BE022351.1|BE022351
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|27425736|gb|CA937256.1|CA937256
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|120533074|gb|EH261207.1|EH261207
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCTTG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|209724432|gb|BW666667.1|BW666667
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|192326679|gb|FK018521.1|FK018521
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|192331703|gb|FK022805.1|FK022805
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: gi|21993826|gb|BQ785354.1|BQ785354
EST:     CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG                         TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATTCTCAATCTTTCTCTGTCTTCGACCCCAATCTTCGCCTATCCCTCTCTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttcttcttcttttatacttttaaaaaaacaaagtttattattttcattacccttgatcgttaaataaaacgtgtcactgtgatttctgtgggg

- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaaa