1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaatccagacatcatttttctacagtagctttgctagagaatatgattagtatatttgcaagagatgctaaatatttaagatattaactgaacattgtcaattccag
species | Glycine max |
transcript | GLYMA19G36990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|192294177|gb|FG986266.1|FG986266
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAACGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAACTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|19054173|gb|BM732840.1|BM732840
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|192303891|gb|FG998243.1|FG998243
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTCTAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|20814775|gb|BQ299253.1|BQ299253
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|58018739|gb|CX705481.1|CX705481
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTNTGAGCCAAGGTCTTGGAGTGATTEST: gi|7691290|gb|AW759483.1|AW759483
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTAGAGCCAAGGTCTTGCAGTGATTEST: gi|10843866|gb|BF067227.1|BF067227
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|8283483|gb|BE021042.1|BE021042
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|15204307|gb|BI427075.1|BI427075
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|298173868|gb|HO017204.1|HO017204
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|17519271|gb|BM188313.1|BM188313
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|209724433|gb|BW666668.1|BW666668
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: AAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|8284792|gb|BE022351.1|BE022351
genomic: AAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|31311909|gb|CD397112.1|CD397112
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTCTGAGCGAAGACATATTATTGGAG-AAATGGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATEST: gi|120533074|gb|EH261207.1|EH261207
genomic: TTCTGAGCGAAGACATATTATTGGAGAAAAT-GATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGAT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGCGAGCTGAEST: gi|209724432|gb|BW666667.1|BW666667
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTG-GAG-TGA
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|192326679|gb|FK018521.1|FK018521
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|192331703|gb|FK022805.1|FK022805
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATTEST: gi|21993826|gb|BQ785354.1|BQ785354
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGAGTGATT
EST: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAG TTTATAGGAAAGAAAGCTGCCTATGCTTTGAGC
genomic: TTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaa ... tcaattccagTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGgtaaagcaaatccagacatcatttttctacagtagctttgctagagaatatgattagtatatttgcaagagatgctaaatatttaagatattaactgaacattgtcaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA