1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taatttttaatttttggtaatgtattgcttctgagtgcgttgattatccatttttccatttggtgtattgatcttttccttcctttctttgtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
species | Glycine max |
transcript | GLYMA19G36990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGGGGCAACTGGAAGTGTEST: gi|192294177|gb|FG986266.1|FG986266
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|19054173|gb|BM732840.1|BM732840
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|192303891|gb|FG998243.1|FG998243
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|20814775|gb|BQ299253.1|BQ299253
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG CTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|7691290|gb|AW759483.1|AW759483
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|15204307|gb|BI427075.1|BI427075
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|298173868|gb|HO017204.1|HO017204
genomic: CCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|17519271|gb|BM188313.1|BM188313
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|213590993|gb|DB973762.1|DB973762
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|8284792|gb|BE022351.1|BE022351
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|27425736|gb|CA937256.1|CA937256
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|120533074|gb|EH261207.1|EH261207
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCTTG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|209724432|gb|BW666667.1|BW666667
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|192326679|gb|FK018521.1|FK018521
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|192331703|gb|FK022805.1|FK022805
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGTEST: gi|21993826|gb|BQ785354.1|BQ785354
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
EST: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAG TTCTTTGTTGGCGGCAACTGGAAGTGT
genomic: CTCCTCCCAGACCCTCACGCGCCATCGTCGCCATGGCAGGCACCGGCAAGgtgctttttc ... gtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
atccatttttccatttggtgtattgatcttttccttcctttctttgtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
tattgat putative branch site (score: 3)
tattgatcttttcctt CT-rich tract
tattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttttaatttttggtaatgtattgcttctgagtgcgttgattatccatttttccatttggtgtattgatcttttccttcctttctttgtggttacagTTCTTTGTTGGCGGCAACTGGAAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - -tgcgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttg