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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCCCAGCAAGCTCAGGAAGTACATGTAGCTGTTCGAGATTGGCTAAAAAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtttattttacctatagttgcattgtgaacttattacggtgttgtggaaatttaagataccacttaatacggttgcatgtctttttagttaat...

Basic information

species Glycine max
transcript GLYMA19G36990.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36990.2 (Glycine max), 5'ss of exon 7
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 5'ss of exon 6
ACTCCCCAGCAAGCTCAGGAAGTACATGTAGCTGTTCGAGATTGGCTAAAAAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtttattttacctatagttgcattgtgaacttattacggtg-ttgtggaaatttaagataccacttaatacggttgcatgtctttttagttaat
 |||| |||||||| || ||||| ||||||||||| || | ||||||||| ||||||||| |||| |||||||| || |||||| |||| || |||||||||   ||   |   ||| ||   || |||   ||||  | ||| | || || | |   | | |  | |||                               
TCTCCTCAGCAAGCACAAGAAGTCCATGTAGCTGTCCGCGGTTGGCTAAAGAAGAATGTCTCTGAGGAAGTTGCTTCCAAAACGAGAATCATATATGGAGgtgcgttagattagttatct---gtcgcaaaatgaaact-ttatgttgattattgccttctcaattgccag------------------------------

upper sequence: GLYMA19G36990.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g01780.t01 (Vitis vinifera), 5'ss of exon 7
ACTCCCCAGCAAGCTCAGGAAGTACATGTAGCTGTTCGAGATTGGCTAAAAAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtttattttacctatagttgcattgtgaacttat-tac--ggtgttgtggaaatttaagataccacttaatacggttgcatgtctttttagttaat
|| |||| ||| || |||||||||||  |||||||||| |||||||| |||||||||||| | | ||||||||| |||||||| |||||||||||||||||||  || ||| |  | |   |   ||  | || |    || |||  |   |  ||  |||||   ||     || | |   ||   | | ||    ||||  
ACACCCCTGCAGGCACAGGAAGTACACATAGCTGTTCGTGATTGGCTTAAAAAGAATGTCTCAGCTGAAGTTGCTTCTAAAACACGAATTATTTATGGAGgtattttatttctactgcagttttctgagtggtaactgcatgtacttgaaatattgataattttttatgttctttcaaatacttat-tatattacctgtta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193466603|gb|FK433060.1|FK433060
EST:     AAAGAATGCCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193324620|gb|FK290912.1|FK290912
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193608961|gb|FK561545.1|FK561545
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208216659|gb|GE012563.1|GE012563
EST:     AAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAA-TTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|58019066|gb|CX705808.1|CX705808
EST:     AAAGAATGTCCCTGATGAAGTGGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193611607|gb|FK560406.1|FK560406
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|207810751|gb|GD782084.1|GD782084
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|22928726|gb|BU545865.1|BU545865
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|51343283|gb|CO984016.1|CO984016
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|192303892|gb|FG998244.1|FG998244
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208297931|gb|GE095778.1|GE095778
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193377009|gb|FK342646.1|FK342646
EST:     AGAATGTCCCTGATGAAGTTGCATCTTAAAACGCGTAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AGAATGTCCCTGATGAAGTTGCATC-TAAAACGCG-AATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208159788|gb|GD956600.1|GD956600
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193543067|gb|FK504220.1|FK504220
EST:     AAGAAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAG-AATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208145995|gb|GD943634.1|GD943634
EST:     ATAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193720483|gb|FK657391.1|FK657391
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208125255|gb|GD921027.1|GD921027
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|207703691|gb|GD686577.1|GD686577
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208124914|gb|GD922568.1|GD922568
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|58018739|gb|CX705481.1|CX705481
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193365247|gb|FK331810.1|FK331810
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|207752430|gb|GD725837.1|GD725837
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTGGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193553237|gb|FK509944.1|FK509944
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208232828|gb|GE030369.1|GE030369
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31306345|gb|CD391548.1|CD391548
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193310655|gb|FK276819.1|FK276819
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31472227|gb|CD414255.1|CD414255
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193584039|gb|FK542021.1|FK542021
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31468010|gb|CD410038.1|CD410038
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31312048|gb|CD397251.1|CD397251
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208133811|gb|GD929588.1|GD929588
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|151403402|gb|EV273212.1|EV273212
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208284861|gb|GE082035.1|GE082035
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31462854|gb|CD404882.1|CD404882
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCNAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193401803|gb|FK365916.1|FK365916
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31467265|gb|CD409293.1|CD409293
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193537682|gb|FK497615.1|FK497615
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAGCAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193519001|gb|FK474570.1|FK474570
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGGGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193327767|gb|FK296826.1|FK296826
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193600511|gb|FK554710.1|FK554710
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|192331704|gb|FK022806.1|FK022806
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|209724433|gb|BW666668.1|BW666668
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|31311909|gb|CD397112.1|CD397112
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193603110|gb|FK559415.1|FK559415
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|207692256|gb|GD674397.1|GD674397
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193410152|gb|FK370847.1|FK370847
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208182236|gb|GD980249.1|GD980249
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208326736|gb|GE124954.1|GE124954
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|193705817|gb|FK648037.1|FK648037
EST:     AAGAAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTTTTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAG-AATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|207809969|gb|GD782827.1|GD782827
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208176680|gb|GD979111.1|GD979111
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|214007266|gb|DB990537.1|DB990537
EST:     AAAGAATGGCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
EST: gi|208180660|gb|GD975891.1|GD975891
EST:     AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAG                         GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG
genomic: AAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtt ... ctgttttcagGGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCCCCAGCAAGCTCAGGAAGTACATGTAGCTGTTCGAGATTGGCTAAAAAAGAATGTCCCTGATGAAGTTGCATCTAAAACGCGAATTATTTATGGAGgtaaattgtttattttacctatagttgcattgtgaacttattacggtgttgtggaaatttaagataccacttaatacggttgcatgtctttttagttaat

- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA