1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taccttgtttttaagattggtattttatttcttgcaaatgcataacaaaagaatgctactactactggtcatgattttaaattcaaaatatttctggcagTGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGGGTACCTGATCCTTAAATTGTGAGTGATTTGAGAACTGGATTTCCTGAAG
species | Glycine max |
transcript | GLYMA19G36220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG TGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGGEST: gi|120491608|gb|EH219775.1|EH219775
genomic: TTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAGgtaactctgc ... tttctggcagTGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGG
EST: TTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG TGAATTCTGGGTGAATGAAACACATTCATTGAAGTATCTTAAGCTACAAAGEST: gi|120491468|gb|EH219635.1|EH219635
genomic: TTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAGgtaactctgc ... tttctggcagTGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGG
EST: TTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG TGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGG
genomic: TTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAGgtaactctgc ... tttctggcagTGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGG
caaaagaatgctactactactggtcatgattttaaattcaaaatatttctggcagTGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGGGTACCTGATCCTTAAATTGTGAGTGATTTGAGAACTGGATTTCCTGAAG
tatttct CT-rich tract
tcatgattttaaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccttgtttttaagattggtattttatttcttgcaaatgcataacaaaagaatgctactactactggtcatgattttaaattcaaaatatttctggcagTGAATTCTGGGTGAATGAAACAAATTCATTGAAGTATCTTAAGCTACAAGGGTACCTGATCCTTAAATTGTGAGTGATTTGAGAACTGGATTTCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
taccttg
- - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcatga