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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttcttaacatttccctaaacataactcacacacccctcttctctagggtttcaatttcaccatgtttccctttctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCACGAGAGCGGCGAGCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGG

Basic information

species Glycine max
transcript GLYMA19G36220.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252330|gb|BG363233.1|BG363233
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|298196320|gb|HO044711.1|HO044711
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|120491608|gb|EH219775.1|EH219775
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|298195924|gb|HO044315.1|HO044315
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGTCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|298164637|gb|HO014282.1|HO014282
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGTATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|19347223|gb|BM892103.1|BM892103
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|7639292|gb|AW733618.1|AW733618
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|298174377|gb|HO017713.1|HO017713
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
EST: gi|6913697|gb|AW395227.1|AW395227
EST:     TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAG                         GGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA
genomic: TTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGgtatcttctt ... ctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacccctcttctctagggtttcaatttcaccatgtttccctttctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCACGAGAGCGGCGAGCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGG
                          tttcaccatgtttccc  CT-rich tract
                    tttcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcttcttaacatttccctaaacataactcacacacccctcttctctagggtttcaatttcaccatgtttccctttctcaaattagGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCACGAGAGCGGCGAGCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG