1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGATTTGCTCTGGGCCATGGCCACTCTTGGTTTTGAGGATTATATCGATCCT
species | Glycine max |
transcript | GLYMA19G36220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|13252330|gb|BG363233.1|BG363233
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|298196320|gb|HO044711.1|HO044711
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|120491608|gb|EH219775.1|EH219775
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAAAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|19271302|gb|BM887558.1|BM887558
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GATACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|298195924|gb|HO044315.1|HO044315
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|298164637|gb|HO014282.1|HO014282
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|19347223|gb|BM892103.1|BM892103
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|120491468|gb|EH219635.1|EH219635
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|7639292|gb|AW733618.1|AW733618
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|10234684|gb|BE803572.1|BE803572
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|298174377|gb|HO017713.1|HO017713
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGAEST: gi|6913697|gb|AW395227.1|AW395227
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
ttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGATTTGCTCTGGGCCATGGCCACTCTTGGTTTTGAGGATTATATCGATCCT
gtttaat putative branch site (score: 4)
tcttattatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGATTTGCTCTGGGCCATGGCCACTCTTGGTTTTGAGGATTATATCGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT