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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATACGAAGGGTTCAGCCAAGGGCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgcacccacgaatgtgcgaatcatgcttgactgcatttgtgggaatatgtgtagaatacaataacatctgattttggaatctttttgttgtgaaatcggcag

Basic information

species Glycine max
transcript GLYMA19G36220.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233651|gb|BE802539.1|BE802539
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCATCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|19268930|gb|BM885186.1|BM885186
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|120491608|gb|EH219775.1|EH219775
EST:     GCGGAGACTCATCTTCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|19271302|gb|BM887558.1|BM887558
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTAC
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTAC
EST: gi|19347223|gb|BM892103.1|BM892103
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCA
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCA
EST: gi|120491468|gb|EH219635.1|EH219635
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|7639292|gb|AW733618.1|AW733618
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTTCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCA
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCA
EST: gi|10234684|gb|BE803572.1|BE803572
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGT
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGT
EST: gi|6913697|gb|AW395227.1|AW395227
EST:     GCGGAGACTCATCTTCTAAGACAGATGTTCAGCCGAGTTCTTATGCTCAG                         CTTGCTCATCAAGGTTCT
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGATACGAAGGGTTCAGCCAAGGGCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgcacccacgaatgtgcgaatcatgcttgactgcatttgtgggaatatgtgtagaatacaataacatctgattttggaatctttttgttgtgaaatcggcag

- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - AAGATG