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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatgcacccacgaatgtgcgaatcatgcttgactgcatttgtgggaatatgtgtagaatacaataacatctgattttggaatctttttgttgtgaaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG

Basic information

species Glycine max
transcript GLYMA19G36220.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233651|gb|BE802539.1|BE802539
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCATCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|19268930|gb|BM885186.1|BM885186
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|120491608|gb|EH219775.1|EH219775
EST:     GCGGAGACTCATCTTCTAAGAGAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|19271302|gb|BM887558.1|BM887558
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTAC
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTAC
EST: gi|19347223|gb|BM892103.1|BM892103
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCA
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCA
EST: gi|120491468|gb|EH219635.1|EH219635
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
EST: gi|7639292|gb|AW733618.1|AW733618
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTTCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCA
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCA
EST: gi|10234684|gb|BE803572.1|BE803572
EST:     GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAG                         CTTGCTCATCAAGGTTCTTTCTCACAAGGT
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGT
EST: gi|6913697|gb|AW395227.1|AW395227
EST:     GCGGAGACTCATCTTCTAAGACAGATGTTCAGCCGAGTTCTTATGCTCAG                         CTTGCTCATCAAGGTTCT
genomic: GCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGgtagaatgca ... aaatcggcagCTTGCTCATCAAGGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtagaatacaataacatctgattttggaatctttttgttgtgaaatcggcagCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAG
       aatacaataa  TA-rich tract