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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag

Basic information

species Glycine max
transcript GLYMA19G36220.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g38820.5 (Oryza sativa), 5'ss of exon 1
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagt-gtctttttctt--ttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcga-atccgtttaatcgt--gtag----------------------------------------------
|||||||||||||  | || || ||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||   |||||||||||||||| ||| |||    || |  | |    |||| || |    |||  || | | | |||  | ||   |  |   | ||||| |  |||   |  |  |  ||||  |  |                                              
TCATGAAGAAGGCCATCCCGGCCAACGGGAAGATCGCCAAGGACGCCAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACCAGCGAgtgagtcgtcgccctcgtcctcccccctcttgtgctctgctctgctctgctctgtcttcttttgagtttt---gagctttgagctcgttgtttgacttgtcgttggcggcgatgagatgtgactgggtttttgttgtggtggggcaacattacag

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g61810.3 (Oryza sativa), 5'ss of exon 2
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattata-tcatcccgtgctttaatttcgaatccgtttaatcgtgtag----------------------
|||||||||||||  | || |||||||| || ||||||||||||||||| |||||| | ||||| ||||| || |||||||||   ||| |||||||||||| |||     |       ||   |    |||| |   |    ||     |||| || | ||  |        | | | |||| |  |  | ||  | || | |                      
TCATGAAGAAGGCCGTCCCGGCGAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCGTCACCAGCGAgtgagt----ctgcgcgggctcggtaccgtgatcctgccctccccacaccttcttttgtgatggttggtttagggtgtgattttgc-tttgctttgtggtttgggcggtggtgcgggatgggacag

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G804893_T01 (Zea mays), 5'ss of exon 2
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag------------------------------------
|||||||||||||  | || || ||||| || |||||||||||||| || |||||||| ||||| ||||| ||||||||||||   |||||||| ||||||| |||| ||         ||   |||||   ||  ||  |||    ||      ||    |  | | | | ||||||  || |     ||||  |  ||                                       
TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACTAGCGAgtaagtgcctcagctgcggctgactcttacttttgcttggcttg---ttgggaatttggagtggcgttcagggctttagcttggctggggttttgtgttgacttgtccatgtccacgtttttttgtccgctctttgcag

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G064426_T02 (Zea mays), 5'ss of exon 2
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgtttttt---ctcttattatatcatcccgtg--ctttaatttcgaatccgtttaatcgtgtag----------------------------------------
|||||||||||||  | || || ||||| || |||||||||||||| || |||||||| ||||| ||||| || |||||||||   |||||||| ||||||| |||  ||    |    ||   ||| |   |||  | |  |  |  | ||      | |   |  | |  ||    |   | ||| |  |  ||    |  |||                                          
TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcag

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G303465_T04 (Zea mays), 5'ss of exon 1
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagt-gtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatca----tcccgtgctttaatttcgaatccgtttaatcgtgtag-------------------
|||||||||||||  | || || ||||| || |||||||||||||| || |||||| | ||||| ||||| |||||||||||    ||| | |||||||||| ||| | |  ||         |     | | |    |  | |    ||  |||   ||    |      | |  || |||||| | | ||  |||     ||                       
TCATGAAGAAGGCCGTCCCGGCCAACGGCAAGATCGCCAAGGACGCTAAGGAGACCCTGCAGGAGTGCGTCTCCGAGTTCATATCATTCGTGACCAGCGAgtaagttgacagttggcaccgcctggtagacggtagcgtagcgtagccttggtcttggatcgggttggtttttctttgttttaatgtaggataggttctgatgtaagttcacgggtgctggttgcag

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g03260.t01 (Vitis vinifera), 5'ss of exon 1
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag
||||||||||||| || || ||||| || || ||||| ||||| || ||||||| | | || |||||||| || |||||||||||||||||||| |||||||   || ||  | | ||| || || |||  |||        | |||  ||  |  | || | |  |   ||  || ||||      |               
TCATGAAGAAGGCGCTTCCCGCGAATGGAAAGATCGCTAAGGATGCGAAAGAGATCATGCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACTAGCGAgt--atggctgatgcattttttcttttta--attttaggcggtgcgtgattgatggtgttgt-tggttttgtttttcaattggatgcctag------------

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S25_10V6.1 (Physcomitrella patens), 5'ss of exon 1
----TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag
    |||||||||||||  | ||||| || | ||| || ||||| || || || ||||| |||||||| || || || || ||||||||||||||||| |||||||   |   ||||||    | | |   ||    | |   | || | |   | |   |    |    |  | |    |||| | | |   ||| |  | ||   
CGCATCATGAAGAAGGCGTTGCCTGCTAATGCTAAGATTGCCAAAGATGCGAAGGAGACTGTTCAGGAGTGTGTTTCAGAATTCATCAGTTTCATCACTAgcgagt--atccgtttttcacaacgtctaaataattctgacatttttgcatagatcccgctgccctcatcttacctctgctaatcttgta---gttgatccatgc--

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ15374 (Selaginella moellendorffii), 5'ss of exon 1
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag
| ||||||||||| || || ||||| |  || ||||||||||| ||||| ||||| || || |||||||| || ||||||||||| |||||||| ||||||| ||| | |  |||  | |||| |  |    || | | |||||  || |   |  ||                                             
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCGGAGTTCATCAGCTTCATCACTAGCGAgtaagtat-tgcttcgatcctttgtggtgatgttaactatcttc--ttctactttgtag--------------------------------------------

upper sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag
| ||||||||||| || || ||||| |  || ||||||||||| ||||| ||||| || || |||||||| || ||||||||||| |||||||| ||||||| ||| |   |     ||||||   |  |   |  |  |  |   || ||   |||   |                                          
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233651|gb|BE802539.1|BE802539
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|13252330|gb|BG363233.1|BG363233
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|298196320|gb|HO044711.1|HO044711
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|120491608|gb|EH219775.1|EH219775
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAAAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|19271302|gb|BM887558.1|BM887558
EST:     GATACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|298195924|gb|HO044315.1|HO044315
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|298164637|gb|HO014282.1|HO014282
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|19347223|gb|BM892103.1|BM892103
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|120491468|gb|EH219635.1|EH219635
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|7639292|gb|AW733618.1|AW733618
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|10234684|gb|BE803572.1|BE803572
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|298174377|gb|HO017713.1|HO017713
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
EST: gi|6913697|gb|AW395227.1|AW395227
EST:     GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGA                         GGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA
genomic: GAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtct ... aatcgtgtagGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGA