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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatttgaaatgaaatatttgctaacctggctttcctaaacaacgttttcctttcatcatttgttttctgcattagcaaaatctgatgtattgtaattatgacatcctttgatacaactctcccaattataagcacacttgattgcctgtctgcag

Basic information

species Glycine max
transcript GLYMA19G36070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 9
GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatttgaaatgaaatatttgctaacctggctttcctaaacaacgttttcctttcatcatttgttttctgcattagcaaaatctgatgtattgtaattatgacatcctttgatacaactctcccaattataagcacacttgattgcctgtctgcag
|| ||||| |||||||| ||||| ||||| ||||||||||||||| |  |  |||  || |||||||||   |||||||||||  |||||  ||         ||  |||  | ||||  |       | | |     | |||  |  | |   ||  || |||| ||||   |    ||  |  ||                                                     
GTAACTGCGAACATGAGAGGAAGTAGTGCGGAGGAAGTGGCTGAGCGGGTTTTGACCCAGCCATCATTATCTGGTTTGCAGgtcagatttagaac------cctggcaaca-gccttttatgtttccagatctagaaacctcaagtcatcttatcaaaaggaaaaactgaaagaaaaaaaaaaaaacc----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735537|gb|BM528819.1|BM528819
EST:     AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG                         GGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatttg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCA