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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTGGTTTCAGAGGCCCAAAGACATAGTAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTGGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattttcgcgttaattaatacccactgtttcttggatgctccactcggtaccactgatgtggcctaactcacaatcttcctgcttcaaattttga...

Basic information

species Glycine max
transcript GLYMA19G36070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 3
CGTTTGGTTTCAGAGGCCCAAAGACATAGTAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTGGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattttcgcgttaattaatacccac-tgtttcttggatgctccactcggtaccactgatgtggcctaactcacaatcttcctgcttcaaattttga
 || ||||||||| |||| |||||||| || ||||||||||| ||||||||||| |||||||| || || || || |||||  ||| |||| |||| ||||| ||||||   |  |   ||  ||      ||  |   ||||  |    |           || | |        | ||| |||   |||  |   ||| 
AGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAATTGTTGTCTGGAGATCTAGACCTTGGCATCGTTGGTCTTGATACAGTCACTGAATATGGACAGgtaagcattaaggtataggttgttattggggtgcatacgggatctttggatttcattttgaaatttagtgcctactaaaattttctctcttttatagttg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324072|gb|FK019363.1|FK019363
EST:     ATCTTGACCTTGGTATTGTGGGACTCGATACTTTCAGTGAACATGGCCAG                         GGTAATGATGATCTTATCATTGTCCACGAGGCTCTGGAGTATGGTGATTGC
genomic: ATCTTGACCTTGGTATTGTGGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattt ... cttttgttagGGTAATGATGATCTTATCATTGTCCACGAGGCTCTGGAGTATGGTGATTGC