Sequence
atgc intronic sequence ATGC exonic sequencegtgtgatttgaaatgaaatatttgctaacctggctttcctaaacaacgttttcctttcatcatttgttttctgcattagcaaaatctgatgtattgtaattatgacatcctttgatacaactctcccaattataagcacacttgattgcctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCAGACTATTATGCCATAGTCATATGTGTGCCTCAGAAGGCACTATACAAGT
Basic information
species | Glycine max |
transcript | GLYMA19G36070.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36070.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 3'ss of exon 9
gtgtgatttgaaatgaaatatttgctaacctggctttcctaaacaacgttttcctttcatcatttgttttctgcattagcaaaatctgatgtattgtaattatgacatcctttgatacaactctcccaattataagcacacttgattgcctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCAGACTATTATGCCATAGTCATATGTGTGCCTCAGAAGGCACTATACAAGT
|| | | | || ||||| | | | | | | || || || || | | || | || | || || ||| ||||||||| ||||||||||| || || ||||| || ||||||| || | ||||| || ||||| |||||||||||||| || | |||||||| |||||||
-------------------------------------------------------tttaggttgcaatatc-acattaaaagatctcagttcactttgtgcttggtatttcttaatttcaaagggtct-ctaaatgctttcatggttatatgt--gcagGGACCAACTGTAAGTCCAGTCTTTTGCAAACGCGATGGGAGAGTGGCGGCAGATTACTATGCTATAGTCATATGTGTTCCCAAAAAGGCACTCTACAAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18735537|gb|BM528819.1|BM528819EST: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG GGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCA
genomic: AGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAGgtgtgatttg ... ctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatcctttgatacaactctcccaattataagcacacttgattgcctgtctgcagGGACCCACTGTAAGTCCTGTTTTCTGCAAGCGTGATGGGAAGGTAACAGCAGACTATTATGCCATAGTCATATGTGTGCCTCAGAAGGCACTATACAAGT
acttgat putative branch site (score: 5)
cctgtct putative PPT
aattataa TA-rich tract