Sequence
atgc intronic sequence ATGC exonic sequenceGGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTGAGAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaattgttaacttttctgaccttgactatcatgatttgttggtttttcaattaaataaaaaaatagtaggcatgggaaacctgctctgtatcatgcattgtggggttctgtctcactctgacaattgaatgctcttcag
Basic information
species | Glycine max |
transcript | GLYMA19G36070.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g04169.1 (Oryza sativa), 5'ss of exon 7
GGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTGAGAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaattgttaacttttctgaccttgactatcatgatttgttggtttttcaattaaataaaaaaatagtaggcatgggaaacctgctctgtatcatgcattgtggggttctgtctcactctgaca-attgaatgctcttcag
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GGGTATGGCTGATGTTATCGTGGATCTTGTGAGTAGTGGAACAACCTTACGTGAGAATAATTTGAAGGAAATTGATGGTGGAGTAGTTTTGGAAAGCCAGgtaagc-----ctaacctctccctcccttcctctcacgcgtgcaca--catgcatgtgggagagcagatgcctggtattttaattgacatttgcttcatcaaaagataaattgtgctcatttacaagatatgtaatatcacgcag
upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G58080.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTGAGAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaattgttaacttttctgaccttgactatcatgatttgttggtttttcaattaaataaaaaaatagtaggcatgggaaacctgctctgtatcatgcattgtggggttctgtctcactctgacaattgaatgctcttcag
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GGGGATAGCTGATGCCATTTTGGATCTTGTGAGTAGTGGTATAACACTCAAAGAGAACAACTTGAAAGAAATTGAAGGAGGTGTTGTGCTGGAAAGCCAGgtgat-----gtgaagttcttggatc--------catgaactgtctgttt--agaatctgttggcggccatcattcctgaacattttttttttctttgta-atttcag------------------------------------
upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 7
GGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTGAGAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaattgttaacttttctgaccttgactatcatgatttgttggtttttcaattaaataaaaaaatagtaggcatgggaaacctgctctgtatcatgcattgtggggttct-gtctcactctgacaattgaatgctcttcag
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GGGAATAGCTGATGCTATTTTGGATCTTGTGAGTAGTGGGACAACCCTCAGGGAAAACAACTTAAAAGAAATTGAAGGTGGAGTTGTCTTGGAAAGCCAGgtaa----------accttacaagcttttggtctcatg-ttcttgagaaatgctatttgatgagggtctt-taggcat------ctggttttacattctgctttcatctgttctcatcgtaccccaaatattg----ttcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18735537|gb|BM528819.1|BM528819EST: GAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAG GCTGTCTTTATTACAAGCAGGAAATCAGTGATCCAACGGAAAGGAGTACTT
genomic: GAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaatt ... tgctcttcagGCTGTCTTTATTACAAGCAGGAAATCAGTGATCCAACGGAAAGGAGTACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTGAGAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaattgttaacttttctgaccttgactatcatgatttgttggtttttcaattaaataaaaaaatagtaggcatgggaaacctgctctgtatcatgcattgtggggttctgtctcactctgacaattgaatgctcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG