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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatagtttataatttccactcccccctaactccaccagtgtctgcctttattttaattccattttctaatgctagacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG

Basic information

species Glycine max
transcript GLYMA19G36070.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36070.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 3'ss of exon 8
gtgcatagtttataatttccactcccccctaactccaccagtgtctgcctttattttaattccattttctaatgctagacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG
||||  | ||| |  ||||  ||     |    |  || |  | |||  |            |||||||  |  ||   |||| ||||| ||||| |||||||| ||||| ||||| ||||||||||||||| |  |  |||  || |||||||||   |||||||||
gtgcgcatttttttttttctgctatgagcattttatactacaggctgtgt------------cattttc--acacttatcttggcagGTAACTGCGAACATGAGAGGAAGTAGTGCGGAGGAAGTGGCTGAGCGGGTTTTGACCCAGCCATCATTATCTGGTTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735537|gb|BM528819.1|BM528819
EST:     AGATGCTTGAGAGATTGGAAGCACATCTCAGGGCCATTGGGCAGTTCACG                         GTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA
genomic: AGATGCTTGAGAGATTGGAAGCACATCTCAGGGCCATTGGGCAGTTCACGgtgcatagtt ... gacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaccagtgtctgcctttattttaattccattttctaatgctagacttgacagGTTACTGCAAACATGAGGGGAAGCAGTGCAGAGGAAGTGGCTGAGAGAATACTGAGTCAACCATCATTAATGGGTTTGCAG
                                  ttctaat  putative branch site (score: 2)
                 tttattttaattccat  TA-rich tract