1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttaaaattatgatgttgtaaagctactagattctgctcctgtcagtgttttgtacaatcaattgtctggagttccctctgttatttcagATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCAAAAATGCCTCAATGGACAGAAGAAAAGCCTCTACGAGTTGCTACTGGTT
species | Glycine max |
transcript | GLYMA19G36070.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATTGTCCACGAGGCTCTGGAGTATGGTGATTGCCGTTTATCCCTTGCG ATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCAEST: gi|192324072|gb|FK019363.1|FK019363
genomic: TCATTGTCCACGAGGCTCTGGAGTATGGTGATTGCCGTTTATCCCTTGCGgtgagttaaa ... gttatttcagATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCA
EST: TCATTGTCCACGAGGCTCTGGAGTATGGTGATTGCCGTTTATCCCTTGCG ATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCAEST: gi|193623938|gb|FK572950.1|FK572950
genomic: TCATTGTCCACGAGGCTCTGGAGTATGGTGATTGCCGTTTATCCCTTGCGgtgagttaaa ... gttatttcagATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCA
EST: TCATTGTCCACGAGGCTCTCGAGTATGGTGATTGCCGTTTATCCCTTGCG ATTCCCCAATATGGAATATTTGAAAATGTAAATTCAGTGGACGAGCTTGCA
genomic: TCATTGTCCACGAGGCTCTGGAGTATGGTGATTGCCGTTTATCCCTTGCGgtgagttaaa ... gttatttcagATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCA
gctcctgtcagtgttttgtacaatcaattgtctggagttccctctgttatttcagATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCAAAAATGCCTCAATGGACAGAAGAAAAGCCTCTACGAGTTGCTACTGGTT
ttccctctgttatttc CT-rich tract
aatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttaaaattatgatgttgtaaagctactagattctgctcctgtcagtgttttgtacaatcaattgtctggagttccctctgttatttcagATTCCCCAATATGGAATATTTGAAAATGTAAATTCACTGGACGAGCTTGCAAAAATGCCTCAATGGACAGAAGAAAAGCCTCTACGAGTTGCTACTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA