Sequence
atgc intronic sequence ATGC exonic sequenceCTGGGGCCTAAATTTATGAAAGAGAATGGACTTAAGCATGTGACATTTTCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGgtgagagatattgtttgttttattagaagttgctcatttaaattttctgattatcaagcatataattgaccattctgtgttatgacaagatctttgtttt...
Basic information
species | Glycine max |
transcript | GLYMA19G36070.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G58080.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGGGGCCTAAATTTATGAAAGAGAATGGACTTAAGCATGTGACATTTTCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGgtgaga----------gatattgtttgttttattagaagttgctcatttaaattttctgattatcaagcatataattgac-cattctgtgttatgacaagatctttgtttt-------------------------------------------------------------------------
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CTCGGCCCCAAATTTATGAAAGAAAATGGCATAAAGCATGTGGTGTTTTCAACTGCAGACGGAGCACTGGAGGCAGCTCCAGCGgtgagattttcaacgaaaagcttaacatttggcattaagttgcttgtattc-ttttctaaa-aacaagtgttaaactgatatgctctgtgg-aggataatgttgtcagcttgtagtgtcctgatttcatatcttactgtgccttaccagcataatctgttgactcatatgtgcttgttaattag
upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G09795.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGGGGCCTAAATTTATGAAAGAGAATGGACTTAAGCATGTGACATTTTCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGgtgagagatattgtttgttttattagaagttgctcatttaaattttctgattatcaagcatataattgaccattctgtgttatgacaagatctttgtttt---
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CTAGGCCCCAAATTTATGAAAGACAACGGTATAAAGCATGTGACTTTCTCAACTGCAGATGGAGCCCTAGAGGCAGCGCCTGCGgtgagatttacaat--gttttcaaatcagccctagatttcgaactatgcacccttat-tagactaccaagtttccattaggattaaaaaagcttggaatttgt
upper sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 6
CTGGGGCCTAAATTTATGAAAGAGAATGGACTTAAGCATGTGACATTTTCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGgtgagagatattgtttgttttat-tagaagttgctcatttaaattttctgattatcaagcata--taattgaccattctgtgttatgacaagatctttgtttt
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TTGGGTCCTAAATTTTTGAAAGAAAATGGACTGAAGCATGTGACCTTTTCAACTGCTGATGGAGCGCTGGAGGCGGCTCCTGCGgtgaga---atttcctctttaatgtaacaacaagggacttaaatttctgcattttcaaatagaatttgttcacaaccatttgatattgtgtactgttccttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18735537|gb|BM528819.1|BM528819EST: TCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCG ATGGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTG
genomic: TCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGgtgagagata ... ctctttttagATGGGGATAGCCGATGCTATCTTGGACCTTGTAAGTAGTGGAACCACACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGGGCCTAAATTTATGAAAGAGAATGGACTTAAGCATGTGACATTTTCAACTGCTGATGGAGCACTGGAGGCAGCTCCTGCGgtgagagatattgtttgttttattagaagttgctcatttaaattttctgattatcaagcatataattgaccattctgtgttatgacaagatctttgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC