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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgttgttcaccactgtctctaatgtccttttgtatctttatcagttcttgaaaaaaattaaaaactctgttctcatttttgttttttctacttgctagAGAGCAGCAGGTGAAGCCATTGCTCATCATGTGAGGGGTCACTACCATCATCCTTTAGATGCAATACAGAGTTTAAATGCAGACAGA

Basic information

species Glycine max
transcript GLYMA19G17460.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204647|gb|BE330871.1|BE330871
EST:     TCTCTGCTGCTAGGTGTCGAATATATCGAAGAACAAATCATACAAAAAAG                         AGAGCACCAGGTGAAGCCATTGCTCATCATGTGAGGGGTCACTACCATCAT
genomic: TCTCTGCTGCTAGGTGTCGAATATATCGAAGAACAAATCATACAAAAAAGgtagcttaga ... tacttgctagAGAGCAGCAGGTGAAGCCATTGCTCATCATGTGAGGGGTCACTACCATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttgaaaaaaattaaaaactctgttctcatttttgttttttctacttgctagAGAGCAGCAGGTGAAGCCATTGCTCATCATGTGAGGGGTCACTACCATCATCCTTTAGATGCAATACAGAGTTTAAATGCAGACAGA
                     ctctgttctcattttt  CT-rich tract
       aaaaaaattaaaaact  TA-rich tract