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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATGGAGCAAGAAATGTTCAAGATTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCAGGAATGTTGTCTTTGTCCTGTAAAAGgtgtgtattcctcaatatttgagatgcattctatataacttatccttgtacttattttataatgctataaacttgcctcctccttgtgaattttccccac...

Basic information

species Glycine max
transcript GLYMA19G17460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 13
TGTTATGGAGCAAGAAATGTTCAAGATTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCAGGAATGTTGTCTTTGTCCTGTAAAAGgtgtgtattcctcaatatttgagatgc---attctatataacttatccttgtacttattttataatgctataaacttgcctcctccttgtgaattttccccac
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TGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGgtatgttcccaagattgagaggaatctcaagttatagaaatgttaaaccttgacttgcttgtcatt--tatatttatgcagttttataatgaataatgtttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996740|gb|CF808329.1|CF808329
EST:     TTGTGAAACACCTGACATCAAGCAGGAATGTTGTCTTTGTCCTGTAAAAG                         GTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTTACTT
genomic: TTGTGAAACACCTGACATCAAGCAGGAATGTTGTCTTTGTCCTGTAAAAGgtgtgtattc ... tgacacacagGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTTACTT