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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctaactgcttatttctgtagtgtttggtccaggttttttctagtttttcttctacttaaaaagagaagttgggccaaatacattgtccaaataattaaagtctattagaaagtgtattgtttaggcatttctctttagttttcagtttttttttttctgacttgattgtaactggcagGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAGGATTTATTC

Basic information

species Glycine max
transcript GLYMA19G17460.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 14
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 22
gtgagtctaactgcttatttctgtagtgtttggtccaggttttttctagtttttcttctacttaaaaagagaagttgggccaaatacattgtccaaataattaaagtctattagaaagtgtattgtttaggcatttctctttagttttcagtttttttttttctgacttgattgtaactggcagGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAGGATTTATTC
                                                                                          ||  | | |     | ||| ||  |      ||  || | | ||  | ||||  ||  | |  | |       || ||   |      | |||| || || |||||||||||||| ||||| || |||||||| || || || ||| |||||||| |  | |||||| |||||||||||||||||    | || 
------------------------------------------------------------------------------------------gtatacacatc---actctcttgaa-----cataattcaagtatcaccctttgattcactgaatatgaca---tggctgtgtgtgtttttgcagATACGATTACTTGTTTGATCCAGATGAACCTGATGAATTCAAGGTGCCGTGTCTATGTAAATCCCCCAACTGCAGGAAATTCATGAATTAGAGAGTTTTA

upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 22
gtgagtctaactgcttatttctgtagtgtttggtccaggttttttctagtttttcttctacttaaaaagagaagttgggccaaatacattgtccaaata-attaaagtctattagaaagtgtattgtttaggcatttctctttagttttcagtttttttttttctgacttgattgtaactggcagGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAGGATTTATTC
                                                                            |  |  ||  |||| || | ||| |  |   |  | |  ||||   |||| ||             ||||||      | || | |  ||  |||          |||||||||| ||||| |||||||| || ||| |||| ||| | || || || || |||||||||||  | |||||| ||||||||||||||||| ||  |   
----------------------------------------------------------------------------gtacacaacgcatt-tctatatataccattcttcaatctaaagctgattgattg---------tcatagtttaagaaatgttgtgtggtgttttg----------gcagGTATGATTACTTATTTGATCCAGACGAGGCAGAGGAACTCAAGGTGCCATGCTTATGTAAAGCCCCTAACTGCAGGAAATTCATGAATTAGAATAGAAAG

upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 23
gtgagtctaactgcttatttctgtagtgtttggtccaggttttttctagtttttcttctacttaaaaagagaagttgggccaaatacattgtccaaataattaaagtctattagaaagtgtattgtttaggcatttctctttagttttcagtttttttttttctgacttgattgtaactggcagGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAGG-ATTTATTC
                                                                        | ||    ||||| ||   | || ||||   |||      | ||  |  |  |   |   |  | | |  ||| ||  | |    | | | ||      ||||   | ||||||||||||||||||||||||| |||||||| || ||||  || ||||| ||||| ||||||||  |||||||| | |||||||||||||||| |||||   
----------------------------------------------------------------------agatttcaaacaaattcagacttcagataa---aag------aaaacatacaccggccac-tacatgtttagagtgttgtgataaactatgtatggt---gttgtg-tttgcagGTATGACTACTTGTTTGATCCCGATGAGCCGGACGAATGCAAGGTCCCCTGTTTGTGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAGGTATTTACA-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcatttctctttagttttcagtttttttttttctgacttgattgtaactggcagGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAGGATTTATTC
                                          ttgtaac  putative branch site (score: 2)
          tttagttttcagtttt  TA-rich tract