Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttaccaccttttcttgtctgtttcaataatgtacttaatatctttcttttaaaagaaaaatatagcacatcactatcactttatggt...

Basic information

species Glycine max
transcript GLYMA19G17460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 13
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttaccaccttttcttgtctgtttcaataatgtacttaatatctttcttttaaaagaaaaatatagcacatcactatcacttt-atggt------
 || |||||||||||||  |||||||||| |||||| ||||| ||||| ||||| |||||| | || ||| ||||||||||||  | |  ||||||||||||      |||  |    || | || |  |   |||      | | | |||     | |    |||   ||| |  |  | |||    ||  ||| ||||       
GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAGGAAAAAATGGAACCTGCAGTTGGGATTTTGAGTATTCCATCAACTAATTTTGTGAAGgtaaa---tttaatattaacttattgtctttaattttggacctttccataactgtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcag

upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 13
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttac---caccttttcttgtctgtttcaataatgtacttaatatct----ttcttttaaaagaaaaatatagcacatcactatcactttatggt-----------------------------------------
 || |||||||||||||  |||||||||| |||||| ||||| ||||| ||||| || || ||||| ||| ||||||||||||  | |  ||||||||||||       |   |       | | | |   | || |    |||||    |||    ||    ||  ||      ||   | | | |  |  |  |   |  |                                             
GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag

upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 14
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggtt-accaccttttcttgtctgtttcaataatgtacttaat-atctttcttttaaaagaaaaatatagcacatcactatcactttatggt
 |||||||||||||||| ||||||||| |||||  | |||||||||||||||||||||||  | || ||  |||| |||||||  ||||||||| | |||||   |    || || | |  ||  ||    ||| ||||    ||| |||| | ||||   || ||   |||||   | |||  |  ||  |  ||  |   
CACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGAGCCTGCTGTTGGCATCTTGAGCATTCCATCAAATTCTTTTATAAAGgtaaagcaactgttttagctgctagtcacaactgcttcacacgtgttcttattcatctgctttgtaggggaaaatcttggcatgtttctccccattcttt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996740|gb|CF808329.1|CF808329
EST:     TGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAG                         ATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAG
genomic: TGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttt ... tgaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAG