Sequence
atgc intronic sequence ATGC exonic sequencegtaccttttaactccttcctattttgtatgactttacaatgtgataagtttttagatgaattttttagagtgacaacggtactgcaattttctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
Basic information
species | Glycine max |
transcript | GLYMA19G17460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 3'ss of exon 10
gtaccttttaactccttcctattttgta---tgactttacaatgtgataagtttttagatgaattttttagagtgacaacggtac--tgcaattttctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
||| || || || || | || || || || || | || | | || || ||| | || | | || | | ||||| ||||| | || || || ||||| |||||| ||||||| || ||||||||||||||||| |||||||||||||||||| | || || |||||
gtaactcaacttcaatttagatcttccaagttgcctgtagtattgaatgatccttctcacaagggaattggattgatggagttaaaatttatttacattttacagAACCATATGATACTGTAAATGTAAAATGGACAACAGAAAGATGTGCAGTCTGTAGATGGGTTGAAGACTGGGATTACAACAAAATTGTAATCTGTAACAG
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G170412_T01 (Zea mays), 3'ss of exon 10
gtaccttttaactccttcctattttgtatgactttacaatgtgataagtttttagatgaattttttagagtgacaacggtactgcaattt---tctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
| | | | || | | | ||| | | | | || | || || | || || ||||| || | |||| ||||| || || || || ||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||| | ||||| || ||
--gtataaagctttcattttaatcttagtagcttagttgttttgaagatacttctcccagcagatttgaat--tcgtggagcttgaatttgtttcccatgcagACCCATATGATCCTGTAAATGTAAAATGGACGACAGAAAGATGTGCAGTCTGTAGATGGGTTGAAGATTGGGATTACAACAAAATTGTGATTTGTAATAG
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaccttttaactccttcctattttgtatgactttacaatgtgataagtttttagatgaattttttagagtgacaacggtactgcaattttctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
|| | || |||| | || || ||| | ||| ||| ||| |||| | | | | | | | || |||||| ||||| || || ||| |||||||| |||||||||||||| || || |||||||||||||||||||| |||||||| ||||| || ||||||||
---gtagaaaaggaaatggaatcctgtaacatgttgcagtgttttgagtgtttttgtgatgcttttgttg-------gcttttcctttcgttgttggcagAGACATATGAGCCGGTCAATGCGAAGTGGACAACAGAACGATGTGCAGTTTGCAGATGGGTTGAAGATTGGGACTACAACAAGATTATTATCTGCAACAG
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaccttttaactccttcctattttgtatgactttacaatgtgataagtttttagatgaattttttagagtgacaacggtactgcaattttct----ctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
| |||| ||| || | | |||| | | || ||| | || |||| | || | | || |||| || |||| |||||||| || || | || ||||| || || |||||||| || || |||||||| ||||||||||| |||||||| || || || ||||||||
----gtattaagcaattcggatctcaga--acttatcca------aaactttctgctgcgttttgcgctgcttatactggagtgttttttttcattattggcagAAAAGTATGAGCCGGTCAACGTGAAATGGACAACCGAGCGATGTGCAGTTTGCAGATGGGTGGAAGATTGGGACTACAACAAGATCATTATCTGCAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37996740|gb|CF808329.1|CF808329EST: AAGAAAGGAAACAGAAGTTGCTTACCTTTCTACAAG AGAAGTATGAACCAGTTTGTACTAAGTGGACTACAGAACGATGTGCTGTAT
genomic: AAGAAAGGAAACAGAAGTTGCTTACCTTTCTACAAGgtacctttta ... tctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtttttagatgaattttttagagtgacaacggtactgcaattttctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
ttttctct CT-rich tract
tttagatgaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccttttaactccttcctattttgtatgactttacaatgtgataagtttttagatgaattttttagagtgacaacggtactgcaattttctctgacagAGAAGTATGAACCAGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA