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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtacaacttttgcatcatttatttgaaataaccacatttgcactacatgtaatattatcttttcttttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGATCGTAGCCAGATAGCGACAATTGCA

Basic information

species Glycine max
transcript GLYMA18G47670.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47670.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 3'ss of exon 7
--------------------gcaagtacaacttttgcatcatttatttgaaataaccacatttgcactacatgtaatattatcttttcttttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGATCGTAGCCAGATAGCGACAATTGCA
                    |  |  | || ||| |   || ||  ||||  |  |   || | ||     ||    ||| | | || | |  | |||||||||||||||| || || || || |||||||| ||||| |||||||| || |||||||| 
attctatagttacaatatgtgttaagaaaattttggtcacagtttgttgatgtctcatgatattcatatactgaggcattctgtgttttatcatgtgcagTCTTTTATTTTGACTTTTCTAGCCGAGTGGGGGGATCGCAGCCAGATCGCAACAATTGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207848713|gb|GD820214.1|GD820214
EST:     CTTCAGTTCGGCGCTTCTTTTCAAGATTCTGTACACCAATATTTTTGGAG                         TCTTTTATTTTAACATT
genomic: CTTCAGTTCGGCGCTTCTTTTCAAGATTCTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATT
EST: gi|208194571|gb|GD988106.1|GD988106
EST:     ACCAATATTTTTGGAG                         TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
genomic: ACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGATCGTAGCCAGATAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaaataaccacatttgcactacatgtaatattatcttttcttttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGATCGTAGCCAGATAGCGACAATTGCA
    aaataac  putative branch site (score: 2)
                               tattatcttttctttt  putative PPT
                      tacatgtaatattatc  TA-rich tract